Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00565 and AO356_00570 are separated by 226 nucleotides AO356_00570 and AO356_00575 are separated by 51 nucleotides AO356_00575 and AO356_00580 are separated by 216 nucleotides
AO356_00565: AO356_00565 - peptidase, at 122,226 to 123,257
_00565
AO356_00570: AO356_00570 - phosphoglycerate mutase, at 123,484 to 124,194
_00570
AO356_00575: AO356_00575 - SCP-2 family sterol carrier protein, at 124,246 to 124,560
_00575
AO356_00580: AO356_00580 - formyl transferase, at 124,777 to 126,495
_00580
Position (kb)
124
125 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 123.268 kb on + strand at 123.268 kb on + strand at 123.268 kb on + strand at 123.269 kb on - strand at 123.314 kb on - strand at 123.314 kb on - strand at 123.314 kb on - strand at 123.349 kb on + strand at 123.349 kb on + strand at 123.349 kb on + strand at 123.349 kb on + strand at 123.350 kb on - strand at 123.355 kb on + strand at 123.355 kb on + strand at 123.355 kb on + strand at 123.356 kb on - strand at 123.356 kb on - strand at 123.409 kb on + strand at 123.409 kb on + strand at 123.410 kb on - strand at 123.410 kb on - strand at 123.466 kb on + strand at 123.492 kb on + strand at 123.492 kb on + strand at 123.492 kb on + strand at 123.492 kb on + strand at 123.492 kb on + strand at 123.492 kb on + strand at 123.493 kb on - strand at 123.493 kb on - strand at 123.493 kb on - strand at 123.493 kb on - strand at 123.493 kb on - strand at 123.493 kb on - strand at 123.496 kb on + strand at 123.496 kb on + strand at 123.496 kb on + strand at 123.496 kb on + strand at 123.496 kb on + strand at 123.496 kb on + strand at 123.497 kb on - strand at 123.500 kb on + strand at 123.500 kb on + strand at 123.501 kb on - strand at 123.539 kb on - strand at 123.539 kb on - strand at 123.611 kb on + strand, within AO356_00570 at 123.611 kb on + strand, within AO356_00570 at 123.612 kb on - strand, within AO356_00570 at 123.654 kb on + strand, within AO356_00570 at 123.804 kb on + strand, within AO356_00570 at 123.804 kb on + strand, within AO356_00570 at 123.847 kb on - strand, within AO356_00570 at 123.847 kb on - strand, within AO356_00570 at 123.847 kb on - strand, within AO356_00570 at 123.886 kb on + strand, within AO356_00570 at 123.886 kb on + strand, within AO356_00570 at 123.887 kb on - strand, within AO356_00570 at 123.887 kb on - strand, within AO356_00570 at 124.204 kb on - strand at 124.208 kb on + strand at 124.209 kb on - strand at 124.209 kb on - strand at 124.209 kb on - strand at 124.209 kb on - strand at 124.209 kb on - strand at 124.221 kb on + strand at 124.232 kb on + strand at 124.232 kb on + strand at 124.233 kb on - strand at 124.233 kb on - strand at 124.233 kb on - strand at 124.268 kb on + strand at 124.268 kb on + strand at 124.269 kb on - strand at 124.323 kb on - strand, within AO356_00575 at 124.323 kb on - strand, within AO356_00575 at 124.707 kb on - strand at 124.707 kb on - strand at 124.707 kb on - strand at 125.182 kb on + strand, within AO356_00580 at 125.182 kb on + strand, within AO356_00580 at 125.182 kb on + strand, within AO356_00580 at 125.183 kb on - strand, within AO356_00580 at 125.183 kb on - strand, within AO356_00580 at 125.183 kb on - strand, within AO356_00580 at 125.183 kb on - strand, within AO356_00580 at 125.183 kb on - strand, within AO356_00580 at 125.184 kb on + strand, within AO356_00580 at 125.185 kb on - strand, within AO356_00580 at 125.239 kb on + strand, within AO356_00580 at 125.273 kb on - strand, within AO356_00580 at 125.428 kb on + strand, within AO356_00580 at 125.429 kb on - strand, within AO356_00580 at 125.434 kb on + strand, within AO356_00580 at 125.434 kb on + strand, within AO356_00580 at 125.435 kb on - strand, within AO356_00580 at 125.477 kb on + strand, within AO356_00580 at 125.477 kb on + strand, within AO356_00580
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 123,268 + +0.7 123,268 + -2.0 123,268 + -0.0 123,269 - +0.3 123,314 - -2.2 123,314 - +0.4 123,314 - +0.2 123,349 + +1.1 123,349 + -0.9 123,349 + -0.9 123,349 + +0.1 123,350 - -1.1 123,355 + +1.3 123,355 + -1.5 123,355 + +0.7 123,356 - -0.7 123,356 - -0.1 123,409 + +0.8 123,409 + -1.6 123,410 - -0.4 123,410 - -0.8 123,466 + +0.4 123,492 + +0.3 123,492 + +1.0 123,492 + +0.3 123,492 + +1.7 123,492 + -0.1 123,492 + +0.5 123,493 - +0.9 123,493 - +1.4 123,493 - +1.9 123,493 - +0.9 123,493 - +1.6 123,493 - +1.3 123,496 + +0.5 123,496 + -1.0 123,496 + -3.4 123,496 + -2.8 123,496 + +0.3 123,496 + +0.8 123,497 - +0.9 123,500 + +0.3 123,500 + +1.2 123,501 - +0.2 123,539 - +0.7 123,539 - +1.6 123,611 + AO356_00570 0.18 +0.8 123,611 + AO356_00570 0.18 -2.0 123,612 - AO356_00570 0.18 +0.3 123,654 + AO356_00570 0.24 +0.8 123,804 + AO356_00570 0.45 +1.4 123,804 + AO356_00570 0.45 -0.4 123,847 - AO356_00570 0.51 +1.2 123,847 - AO356_00570 0.51 +1.0 123,847 - AO356_00570 0.51 +0.4 123,886 + AO356_00570 0.57 -0.8 123,886 + AO356_00570 0.57 -0.7 123,887 - AO356_00570 0.57 +1.4 123,887 - AO356_00570 0.57 +1.4 124,204 - +0.6 124,208 + +0.9 124,209 - +0.1 124,209 - -0.1 124,209 - +1.3 124,209 - -0.5 124,209 - +1.1 124,221 + +0.2 124,232 + +0.2 124,232 + -0.4 124,233 - +0.6 124,233 - -1.2 124,233 - +1.6 124,268 + +1.8 124,268 + -0.0 124,269 - +0.8 124,323 - AO356_00575 0.24 +0.8 124,323 - AO356_00575 0.24 +1.8 124,707 - -0.5 124,707 - +0.2 124,707 - +0.1 125,182 + AO356_00580 0.24 +1.0 125,182 + AO356_00580 0.24 +0.3 125,182 + AO356_00580 0.24 -0.1 125,183 - AO356_00580 0.24 +1.3 125,183 - AO356_00580 0.24 +0.3 125,183 - AO356_00580 0.24 -0.6 125,183 - AO356_00580 0.24 +1.5 125,183 - AO356_00580 0.24 +0.8 125,184 + AO356_00580 0.24 -1.7 125,185 - AO356_00580 0.24 +0.3 125,239 + AO356_00580 0.27 -0.2 125,273 - AO356_00580 0.29 -0.7 125,428 + AO356_00580 0.38 +0.2 125,429 - AO356_00580 0.38 +1.1 125,434 + AO356_00580 0.38 +0.5 125,434 + AO356_00580 0.38 -1.3 125,435 - AO356_00580 0.38 +0.7 125,477 + AO356_00580 0.41 +0.3 125,477 + AO356_00580 0.41 -0.6
Or see this region's nucleotide sequence