Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00350

Experiment: methylglyoxal 0.016 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00335 and AO356_00340 are separated by 222 nucleotidesAO356_00340 and AO356_00345 are separated by 63 nucleotidesAO356_00345 and AO356_00350 are separated by 32 nucleotidesAO356_00350 and AO356_00355 are separated by 2 nucleotidesAO356_00355 and AO356_00360 are separated by 184 nucleotides AO356_00335: AO356_00335 - integrase, at 65,556 to 67,397 _00335 AO356_00340: AO356_00340 - tRNA-Gly, at 67,620 to 67,695 _00340 AO356_00345: AO356_00345 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 67,759 to 68,319 _00345 AO356_00350: AO356_00350 - excinuclease ABC subunit C, at 68,352 to 70,175 _00350 AO356_00355: AO356_00355 - chemotaxis protein CheY, at 70,178 to 70,762 _00355 AO356_00360: AO356_00360 - GNAT family acetyltransferase, at 70,947 to 71,381 _00360 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 67.506 kb on + strandat 67.507 kb on - strandat 67.519 kb on + strandat 67.564 kb on - strandat 67.717 kb on + strandat 67.718 kb on - strandat 68.354 kb on - strandat 68.375 kb on - strandat 68.375 kb on - strandat 68.375 kb on - strandat 68.397 kb on - strandat 68.397 kb on - strandat 68.418 kb on + strandat 68.418 kb on + strandat 68.419 kb on - strandat 68.519 kb on + strandat 68.520 kb on - strandat 68.525 kb on + strandat 68.526 kb on - strandat 68.659 kb on + strand, within AO356_00350at 68.660 kb on - strand, within AO356_00350at 68.863 kb on + strand, within AO356_00350at 68.897 kb on - strand, within AO356_00350at 68.897 kb on - strand, within AO356_00350at 68.986 kb on + strand, within AO356_00350at 68.986 kb on + strand, within AO356_00350at 68.987 kb on - strand, within AO356_00350at 69.268 kb on + strand, within AO356_00350at 69.268 kb on + strand, within AO356_00350at 69.268 kb on + strand, within AO356_00350at 69.268 kb on + strand, within AO356_00350at 69.268 kb on + strand, within AO356_00350at 69.269 kb on - strand, within AO356_00350at 69.271 kb on + strand, within AO356_00350at 69.272 kb on - strand, within AO356_00350at 69.272 kb on - strand, within AO356_00350at 69.272 kb on - strand, within AO356_00350at 69.670 kb on + strand, within AO356_00350at 69.700 kb on + strand, within AO356_00350at 69.700 kb on + strand, within AO356_00350at 69.700 kb on + strand, within AO356_00350at 69.701 kb on - strand, within AO356_00350at 69.701 kb on - strand, within AO356_00350at 69.701 kb on - strand, within AO356_00350at 69.703 kb on + strand, within AO356_00350at 69.703 kb on + strand, within AO356_00350at 69.703 kb on + strand, within AO356_00350at 69.703 kb on + strand, within AO356_00350at 69.704 kb on - strand, within AO356_00350at 69.704 kb on - strand, within AO356_00350at 69.704 kb on - strand, within AO356_00350at 69.794 kb on - strand, within AO356_00350at 69.794 kb on - strand, within AO356_00350at 69.865 kb on + strand, within AO356_00350at 69.865 kb on + strand, within AO356_00350at 69.865 kb on + strand, within AO356_00350at 69.872 kb on - strand, within AO356_00350at 69.872 kb on - strand, within AO356_00350at 69.902 kb on - strand, within AO356_00350at 69.902 kb on - strand, within AO356_00350at 70.039 kb on + strandat 70.081 kb on + strandat 70.081 kb on + strandat 70.082 kb on - strandat 70.082 kb on - strandat 70.262 kb on - strand, within AO356_00355at 70.272 kb on + strand, within AO356_00355at 70.272 kb on + strand, within AO356_00355at 70.272 kb on + strand, within AO356_00355at 70.272 kb on + strand, within AO356_00355at 70.272 kb on + strand, within AO356_00355at 70.273 kb on - strand, within AO356_00355at 70.273 kb on - strand, within AO356_00355at 70.322 kb on + strand, within AO356_00355at 70.322 kb on + strand, within AO356_00355at 70.322 kb on + strand, within AO356_00355at 70.322 kb on + strand, within AO356_00355at 70.323 kb on - strand, within AO356_00355at 70.323 kb on - strand, within AO356_00355at 70.323 kb on - strand, within AO356_00355at 70.449 kb on + strand, within AO356_00355at 70.449 kb on + strand, within AO356_00355at 70.449 kb on + strand, within AO356_00355at 70.450 kb on - strand, within AO356_00355at 70.667 kb on + strand, within AO356_00355at 70.668 kb on - strand, within AO356_00355at 70.733 kb on + strandat 70.733 kb on + strandat 70.769 kb on - strandat 70.769 kb on - strandat 70.769 kb on - strandat 70.806 kb on - strandat 70.813 kb on + strandat 70.814 kb on - strandat 70.843 kb on + strandat 70.864 kb on + strandat 70.888 kb on - strandat 70.911 kb on + strandat 70.912 kb on - strandat 70.924 kb on + strandat 71.020 kb on + strand, within AO356_00360at 71.020 kb on + strand, within AO356_00360at 71.020 kb on + strand, within AO356_00360at 71.021 kb on - strand, within AO356_00360at 71.021 kb on - strand, within AO356_00360at 71.021 kb on - strand, within AO356_00360at 71.148 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.167 kb on + strand, within AO356_00360at 71.168 kb on - strand, within AO356_00360

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol%
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67,506 + -1.3
67,507 - +0.6
67,519 + +0.6
67,564 - -1.3
67,717 + +0.6
67,718 - -0.8
68,354 - +0.3
68,375 - -1.6
68,375 - -2.1
68,375 - -1.1
68,397 - -2.1
68,397 - -2.4
68,418 + -4.5
68,418 + -2.3
68,419 - -2.1
68,519 + -1.7
68,520 - -2.2
68,525 + -3.7
68,526 - -3.6
68,659 + AO356_00350 0.17 -2.5
68,660 - AO356_00350 0.17 -2.8
68,863 + AO356_00350 0.28 -4.3
68,897 - AO356_00350 0.30 -1.8
68,897 - AO356_00350 0.30 -3.0
68,986 + AO356_00350 0.35 -2.3
68,986 + AO356_00350 0.35 -3.2
68,987 - AO356_00350 0.35 -3.4
69,268 + AO356_00350 0.50 -4.0
69,268 + AO356_00350 0.50 -3.7
69,268 + AO356_00350 0.50 -2.0
69,268 + AO356_00350 0.50 -1.7
69,268 + AO356_00350 0.50 -1.8
69,269 - AO356_00350 0.50 -1.5
69,271 + AO356_00350 0.50 -3.4
69,272 - AO356_00350 0.50 -3.1
69,272 - AO356_00350 0.50 -3.1
69,272 - AO356_00350 0.50 -3.6
69,670 + AO356_00350 0.72 -2.6
69,700 + AO356_00350 0.74 -3.2
69,700 + AO356_00350 0.74 -2.6
69,700 + AO356_00350 0.74 -3.2
69,701 - AO356_00350 0.74 -2.7
69,701 - AO356_00350 0.74 -0.7
69,701 - AO356_00350 0.74 -3.6
69,703 + AO356_00350 0.74 -2.6
69,703 + AO356_00350 0.74 -2.4
69,703 + AO356_00350 0.74 -2.7
69,703 + AO356_00350 0.74 -2.2
69,704 - AO356_00350 0.74 -2.8
69,704 - AO356_00350 0.74 -2.2
69,704 - AO356_00350 0.74 -4.0
69,794 - AO356_00350 0.79 -2.6
69,794 - AO356_00350 0.79 -3.5
69,865 + AO356_00350 0.83 -3.1
69,865 + AO356_00350 0.83 -3.1
69,865 + AO356_00350 0.83 -2.7
69,872 - AO356_00350 0.83 -4.2
69,872 - AO356_00350 0.83 -4.1
69,902 - AO356_00350 0.85 -2.4
69,902 - AO356_00350 0.85 -3.4
70,039 + -3.5
70,081 + -1.8
70,081 + -3.1
70,082 - -2.6
70,082 - -3.1
70,262 - AO356_00355 0.14 +1.4
70,272 + AO356_00355 0.16 -2.4
70,272 + AO356_00355 0.16 -2.3
70,272 + AO356_00355 0.16 -2.1
70,272 + AO356_00355 0.16 -1.6
70,272 + AO356_00355 0.16 -2.4
70,273 - AO356_00355 0.16 +1.3
70,273 - AO356_00355 0.16 +1.0
70,322 + AO356_00355 0.25 -3.1
70,322 + AO356_00355 0.25 -0.0
70,322 + AO356_00355 0.25 -1.3
70,322 + AO356_00355 0.25 -1.7
70,323 - AO356_00355 0.25 +2.2
70,323 - AO356_00355 0.25 +1.4
70,323 - AO356_00355 0.25 -2.7
70,449 + AO356_00355 0.46 -3.5
70,449 + AO356_00355 0.46 -2.5
70,449 + AO356_00355 0.46 -2.7
70,450 - AO356_00355 0.46 +1.8
70,667 + AO356_00355 0.84 -1.3
70,668 - AO356_00355 0.84 +2.2
70,733 + +0.6
70,733 + -2.9
70,769 - +1.6
70,769 - -2.5
70,769 - +1.3
70,806 - +1.7
70,813 + -2.7
70,814 - +2.3
70,843 + -1.8
70,864 + -0.9
70,888 - -0.5
70,911 + +1.0
70,912 - +0.5
70,924 + -1.4
71,020 + AO356_00360 0.17 -0.1
71,020 + AO356_00360 0.17 +0.6
71,020 + AO356_00360 0.17 -0.7
71,021 - AO356_00360 0.17 +0.3
71,021 - AO356_00360 0.17 -2.6
71,021 - AO356_00360 0.17 +0.5
71,148 + AO356_00360 0.46 +0.6
71,167 + AO356_00360 0.51 -0.6
71,167 + AO356_00360 0.51 -0.1
71,167 + AO356_00360 0.51 -2.2
71,167 + AO356_00360 0.51 +0.7
71,167 + AO356_00360 0.51 +0.4
71,167 + AO356_00360 0.51 +0.6
71,168 - AO356_00360 0.51 +0.2

Or see this region's nucleotide sequence