Experiment: methylglyoxal 0.016 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00300 and AO356_00305 are separated by 494 nucleotides AO356_00305 and AO356_00310 are separated by 211 nucleotides AO356_00310 and AO356_00315 overlap by 8 nucleotides
AO356_00300: AO356_00300 - relaxase, at 54,440 to 56,164
_00300
AO356_00305: AO356_00305 - hypothetical protein, at 56,659 to 57,279
_00305
AO356_00310: AO356_00310 - hypothetical protein, at 57,491 to 58,111
_00310
AO356_00315: AO356_00315 - nucleotidyltransferase, at 58,104 to 59,387
_00315
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 55.682 kb on + strand, within AO356_00300 at 55.683 kb on - strand, within AO356_00300 at 55.683 kb on - strand, within AO356_00300 at 55.703 kb on - strand, within AO356_00300 at 55.703 kb on - strand, within AO356_00300 at 55.703 kb on - strand, within AO356_00300 at 55.885 kb on - strand, within AO356_00300 at 55.937 kb on - strand, within AO356_00300 at 55.937 kb on - strand, within AO356_00300 at 56.080 kb on + strand at 56.088 kb on - strand at 56.112 kb on + strand at 56.113 kb on - strand at 56.155 kb on - strand at 56.173 kb on - strand at 56.175 kb on + strand at 56.175 kb on + strand at 56.180 kb on + strand at 56.181 kb on - strand at 56.212 kb on - strand at 56.214 kb on + strand at 56.244 kb on + strand at 56.245 kb on - strand at 56.280 kb on + strand at 56.281 kb on - strand at 56.281 kb on - strand at 56.281 kb on - strand at 56.374 kb on + strand at 56.374 kb on + strand at 56.374 kb on + strand at 56.375 kb on - strand at 56.375 kb on - strand at 56.375 kb on - strand at 56.404 kb on + strand at 56.404 kb on + strand at 56.405 kb on - strand at 56.407 kb on + strand at 56.407 kb on + strand at 56.407 kb on + strand at 56.407 kb on + strand at 56.407 kb on + strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.408 kb on - strand at 56.487 kb on + strand at 56.487 kb on + strand at 56.560 kb on - strand at 56.560 kb on - strand at 56.579 kb on - strand at 56.595 kb on + strand at 56.596 kb on - strand at 56.716 kb on + strand at 56.717 kb on - strand at 56.787 kb on + strand, within AO356_00305 at 56.850 kb on + strand, within AO356_00305 at 56.851 kb on - strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.927 kb on + strand, within AO356_00305 at 56.928 kb on - strand, within AO356_00305 at 56.944 kb on + strand, within AO356_00305 at 56.944 kb on + strand, within AO356_00305 at 56.965 kb on + strand, within AO356_00305 at 56.986 kb on + strand, within AO356_00305 at 56.986 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.997 kb on + strand, within AO356_00305 at 57.142 kb on - strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.186 kb on - strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.201 kb on - strand, within AO356_00305 at 57.203 kb on + strand, within AO356_00305 at 57.204 kb on - strand, within AO356_00305 at 57.234 kb on + strand at 57.234 kb on + strand at 57.234 kb on + strand at 57.234 kb on + strand at 57.235 kb on - strand at 57.235 kb on - strand at 57.241 kb on + strand at 57.242 kb on - strand at 57.267 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.320 kb on - strand at 57.320 kb on - strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.338 kb on + strand at 57.338 kb on + strand at 57.338 kb on + strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.347 kb on + strand at 57.348 kb on - strand at 57.394 kb on - strand at 57.394 kb on - strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.435 kb on - strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.454 kb on - strand at 57.483 kb on + strand at 57.484 kb on - strand at 57.484 kb on - strand at 57.484 kb on - strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.489 kb on - strand at 57.489 kb on - strand at 57.489 kb on - strand at 57.490 kb on + strand at 57.490 kb on + strand at 57.533 kb on + strand at 57.534 kb on - strand at 57.546 kb on - strand at 57.572 kb on + strand, within AO356_00310 at 57.707 kb on + strand, within AO356_00310 at 57.708 kb on - strand, within AO356_00310 at 57.708 kb on - strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.719 kb on + strand, within AO356_00310 at 57.720 kb on - strand, within AO356_00310 at 57.720 kb on - strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.741 kb on - strand, within AO356_00310 at 57.741 kb on - strand, within AO356_00310 at 57.846 kb on + strand, within AO356_00310 at 57.846 kb on + strand, within AO356_00310 at 58.015 kb on - strand, within AO356_00310 at 58.109 kb on + strand at 58.109 kb on + strand at 58.109 kb on + strand at 58.110 kb on - strand at 58.209 kb on + strand at 58.212 kb on + strand at 58.212 kb on + strand at 58.213 kb on - strand at 58.213 kb on - strand at 58.218 kb on - strand at 58.249 kb on + strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.257 kb on + strand, within AO356_00315 at 58.257 kb on + strand, within AO356_00315
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.016 vol% remove 55,682 + AO356_00300 0.72 -0.7 55,683 - AO356_00300 0.72 -1.0 55,683 - AO356_00300 0.72 +0.3 55,703 - AO356_00300 0.73 -2.1 55,703 - AO356_00300 0.73 +0.0 55,703 - AO356_00300 0.73 +0.7 55,885 - AO356_00300 0.84 +0.6 55,937 - AO356_00300 0.87 +0.4 55,937 - AO356_00300 0.87 -0.7 56,080 + +1.6 56,088 - +1.6 56,112 + -2.4 56,113 - +0.3 56,155 - -0.2 56,173 - -0.7 56,175 + -2.0 56,175 + +1.5 56,180 + -0.2 56,181 - -1.0 56,212 - -1.7 56,214 + +0.4 56,244 + -0.3 56,245 - +1.9 56,280 + +1.6 56,281 - +0.9 56,281 - +0.0 56,281 - -0.3 56,374 + -0.5 56,374 + +0.8 56,374 + +0.1 56,375 - -0.8 56,375 - +1.9 56,375 - +0.1 56,404 + +0.2 56,404 + +0.8 56,405 - +1.3 56,407 + +0.5 56,407 + -1.2 56,407 + -0.2 56,407 + +0.9 56,407 + -0.8 56,408 - +1.1 56,408 - -1.1 56,408 - +0.9 56,408 - -0.9 56,408 - -1.7 56,408 - -0.4 56,408 - -1.5 56,408 - +0.2 56,408 - +0.3 56,487 + +1.5 56,487 + +0.5 56,560 - -0.7 56,560 - -0.3 56,579 - -1.8 56,595 + +1.9 56,596 - +0.3 56,716 + -0.2 56,717 - +1.1 56,787 + AO356_00305 0.21 -0.4 56,850 + AO356_00305 0.31 +0.1 56,851 - AO356_00305 0.31 -0.4 56,885 + AO356_00305 0.36 +0.8 56,885 + AO356_00305 0.36 +0.7 56,885 + AO356_00305 0.36 -0.2 56,885 + AO356_00305 0.36 -2.0 56,886 - AO356_00305 0.37 -0.2 56,886 - AO356_00305 0.37 +0.3 56,886 - AO356_00305 0.37 -2.5 56,903 + AO356_00305 0.39 +1.2 56,903 + AO356_00305 0.39 +0.2 56,903 + AO356_00305 0.39 -1.3 56,904 - AO356_00305 0.39 -0.4 56,904 - AO356_00305 0.39 +0.4 56,904 - AO356_00305 0.39 +0.4 56,904 - AO356_00305 0.39 +1.6 56,927 + AO356_00305 0.43 -1.1 56,928 - AO356_00305 0.43 -0.2 56,944 + AO356_00305 0.46 +0.4 56,944 + AO356_00305 0.46 +0.3 56,965 + AO356_00305 0.49 +1.0 56,986 + AO356_00305 0.53 +0.8 56,986 + AO356_00305 0.53 +1.7 56,990 + AO356_00305 0.53 +1.3 56,990 + AO356_00305 0.53 +1.0 56,990 + AO356_00305 0.53 +0.8 56,990 + AO356_00305 0.53 -0.7 56,991 - AO356_00305 0.53 +1.2 56,991 - AO356_00305 0.53 -0.3 56,991 - AO356_00305 0.53 -0.5 56,993 + AO356_00305 0.54 -0.1 56,993 + AO356_00305 0.54 +0.0 56,993 + AO356_00305 0.54 -0.0 56,993 + AO356_00305 0.54 +0.8 56,993 + AO356_00305 0.54 +0.5 56,993 + AO356_00305 0.54 -0.1 56,994 - AO356_00305 0.54 -0.7 56,994 - AO356_00305 0.54 +0.2 56,994 - AO356_00305 0.54 +1.8 56,997 + AO356_00305 0.54 +1.2 57,142 - AO356_00305 0.78 +0.5 57,185 + AO356_00305 0.85 +0.5 57,185 + AO356_00305 0.85 -0.2 57,185 + AO356_00305 0.85 -1.1 57,185 + AO356_00305 0.85 +0.3 57,185 + AO356_00305 0.85 +1.2 57,186 - AO356_00305 0.85 +0.9 57,200 + AO356_00305 0.87 +1.0 57,200 + AO356_00305 0.87 +0.3 57,200 + AO356_00305 0.87 +1.2 57,200 + AO356_00305 0.87 +0.2 57,201 - AO356_00305 0.87 +0.9 57,203 + AO356_00305 0.88 -0.2 57,204 - AO356_00305 0.88 +1.7 57,234 + -0.8 57,234 + -1.0 57,234 + -1.7 57,234 + +1.0 57,235 - -0.4 57,235 - +1.6 57,241 + -0.5 57,242 - -2.1 57,267 + +0.2 57,317 + -0.8 57,317 + -1.2 57,317 + -0.8 57,317 + +0.3 57,317 + +0.5 57,318 - -0.5 57,318 - +0.3 57,318 - +0.4 57,318 - +0.2 57,320 - -1.3 57,320 - -1.3 57,329 + -0.7 57,329 + +0.7 57,329 + +0.7 57,329 + -0.6 57,338 + +0.4 57,338 + +0.2 57,338 + +0.3 57,339 - +1.0 57,339 - -0.0 57,339 - +1.6 57,339 - -1.0 57,347 + +0.9 57,348 - +0.4 57,394 - +0.7 57,394 - +0.7 57,434 + +0.8 57,434 + +1.9 57,434 + +0.2 57,434 + +0.2 57,434 + -0.6 57,434 + -1.0 57,434 + -1.1 57,435 - -1.7 57,436 + +1.1 57,436 + +2.7 57,436 + -1.1 57,436 + -0.7 57,436 + +0.3 57,437 - -0.8 57,437 - +0.7 57,437 - -1.1 57,437 - +0.2 57,437 - +0.8 57,437 - -0.7 57,437 - -0.5 57,437 - +0.5 57,438 + +1.8 57,438 + +1.3 57,438 + -0.1 57,438 + +0.5 57,438 + +1.2 57,439 - +1.4 57,439 - -1.2 57,439 - -1.1 57,439 - -0.1 57,439 - +0.6 57,439 - +1.6 57,439 - -0.7 57,439 - -0.2 57,439 - +0.8 57,439 - +0.3 57,439 - -1.2 57,439 - +0.1 57,439 - +0.8 57,454 - +0.1 57,483 + +0.5 57,484 - -0.9 57,484 - -1.7 57,484 - +0.5 57,488 + +0.7 57,488 + -0.3 57,488 + +0.3 57,488 + +0.3 57,488 + -0.7 57,489 - -0.7 57,489 - +1.4 57,489 - +1.7 57,490 + +0.4 57,490 + +0.4 57,533 + +1.6 57,534 - +1.0 57,546 - +0.8 57,572 + AO356_00310 0.13 +0.3 57,707 + AO356_00310 0.35 +1.3 57,708 - AO356_00310 0.35 +1.6 57,708 - AO356_00310 0.35 -1.2 57,716 + AO356_00310 0.36 +0.9 57,716 + AO356_00310 0.36 -0.9 57,716 + AO356_00310 0.36 +0.7 57,716 + AO356_00310 0.36 +0.9 57,717 - AO356_00310 0.36 +0.2 57,717 - AO356_00310 0.36 -1.2 57,717 - AO356_00310 0.36 +0.5 57,717 - AO356_00310 0.36 +0.5 57,719 + AO356_00310 0.37 +1.3 57,720 - AO356_00310 0.37 -0.9 57,720 - AO356_00310 0.37 +0.6 57,740 + AO356_00310 0.40 +1.0 57,740 + AO356_00310 0.40 +1.2 57,740 + AO356_00310 0.40 +0.5 57,741 - AO356_00310 0.40 +0.4 57,741 - AO356_00310 0.40 +0.2 57,846 + AO356_00310 0.57 +0.5 57,846 + AO356_00310 0.57 +0.4 58,015 - AO356_00310 0.84 -0.3 58,109 + +0.7 58,109 + -0.7 58,109 + -1.2 58,110 - -0.7 58,209 + -0.5 58,212 + -0.1 58,212 + -0.6 58,213 - +0.5 58,213 - -1.4 58,218 - +1.5 58,249 + AO356_00315 0.11 -0.7 58,250 - AO356_00315 0.11 +0.7 58,250 - AO356_00315 0.11 +0.2 58,250 - AO356_00315 0.11 +1.5 58,250 - AO356_00315 0.11 +0.1 58,257 + AO356_00315 0.12 +0.1 58,257 + AO356_00315 0.12 -0.9
Or see this region's nucleotide sequence