Experiment: MoYLS4 with methylglyoxal 0.031 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3038 and DvMF_3039 are separated by 177 nucleotides DvMF_3039 and DvMF_3040 are separated by 443 nucleotides DvMF_3040 and DvMF_3041 overlap by 4 nucleotides
DvMF_3038: DvMF_3038 - transcriptional regulator, TetR family (RefSeq), at 3,835,379 to 3,836,008
_3038
DvMF_3039: DvMF_3039 - peptidase M24 (RefSeq), at 3,836,186 to 3,837,445
_3039
DvMF_3040: DvMF_3040 - coenzyme A binding protein (RefSeq), at 3,837,889 to 3,838,311
_3040
DvMF_3041: DvMF_3041 - protein of unknown function UPF0153 (RefSeq), at 3,838,308 to 3,838,835
_3041
Position (kb)
3836
3837
3838 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3835.253 kb on + strand at 3835.316 kb on + strand at 3836.312 kb on + strand, within DvMF_3039 at 3836.522 kb on + strand, within DvMF_3039 at 3836.522 kb on + strand, within DvMF_3039 at 3836.522 kb on + strand, within DvMF_3039 at 3836.642 kb on + strand, within DvMF_3039 at 3836.952 kb on + strand, within DvMF_3039 at 3837.001 kb on - strand, within DvMF_3039 at 3837.001 kb on - strand, within DvMF_3039 at 3837.001 kb on - strand, within DvMF_3039 at 3837.040 kb on + strand, within DvMF_3039 at 3837.060 kb on + strand, within DvMF_3039 at 3837.060 kb on + strand, within DvMF_3039 at 3837.429 kb on + strand at 3837.491 kb on + strand at 3837.499 kb on - strand at 3837.499 kb on - strand at 3837.546 kb on - strand at 3837.670 kb on - strand at 3837.943 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 % remove 3,835,253 + +0.4 3,835,316 + +0.4 3,836,312 + DvMF_3039 0.10 -0.6 3,836,522 + DvMF_3039 0.27 -0.7 3,836,522 + DvMF_3039 0.27 -3.6 3,836,522 + DvMF_3039 0.27 -0.7 3,836,642 + DvMF_3039 0.36 +0.4 3,836,952 + DvMF_3039 0.61 -1.1 3,837,001 - DvMF_3039 0.65 -0.3 3,837,001 - DvMF_3039 0.65 -0.2 3,837,001 - DvMF_3039 0.65 -4.1 3,837,040 + DvMF_3039 0.68 +0.5 3,837,060 + DvMF_3039 0.69 -0.4 3,837,060 + DvMF_3039 0.69 -2.3 3,837,429 + -2.7 3,837,491 + -0.8 3,837,499 - -0.8 3,837,499 - -3.2 3,837,546 - -2.6 3,837,670 - -0.9 3,837,943 - -0.3
Or see this region's nucleotide sequence