Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2975

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2973 and DvMF_2974 are separated by 87 nucleotidesDvMF_2974 and DvMF_2975 are separated by 288 nucleotidesDvMF_2975 and DvMF_2976 are separated by 1 nucleotidesDvMF_2976 and DvMF_2977 are separated by 113 nucleotides DvMF_2973: DvMF_2973 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,749,108 to 3,750,070 _2973 DvMF_2974: DvMF_2974 - transcriptional regulator, HxlR family (RefSeq), at 3,750,158 to 3,750,640 _2974 DvMF_2975: DvMF_2975 - nitroreductase (RefSeq), at 3,750,929 to 3,751,438 _2975 DvMF_2976: DvMF_2976 - 4-oxalocrotonate tautomerase (RefSeq), at 3,751,440 to 3,751,628 _2976 DvMF_2977: DvMF_2977 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 3,751,742 to 3,752,860 _2977 Position (kb) 3750 3751 3752Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3749.980 kb on - strandat 3749.989 kb on - strandat 3749.999 kb on - strandat 3750.179 kb on + strandat 3750.477 kb on - strand, within DvMF_2974at 3750.521 kb on - strand, within DvMF_2974at 3750.622 kb on - strandat 3750.993 kb on - strand, within DvMF_2975at 3751.030 kb on + strand, within DvMF_2975at 3751.058 kb on - strand, within DvMF_2975at 3751.223 kb on + strand, within DvMF_2975at 3751.264 kb on - strand, within DvMF_2975at 3751.285 kb on - strand, within DvMF_2975at 3752.360 kb on - strand, within DvMF_2977at 3752.384 kb on - strand, within DvMF_2977

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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3,749,980 - -0.0
3,749,989 - -0.5
3,749,999 - -0.7
3,750,179 + -2.7
3,750,477 - DvMF_2974 0.66 -0.1
3,750,521 - DvMF_2974 0.75 -1.3
3,750,622 - -3.3
3,750,993 - DvMF_2975 0.13 +2.1
3,751,030 + DvMF_2975 0.20 -0.9
3,751,058 - DvMF_2975 0.25 +0.2
3,751,223 + DvMF_2975 0.58 -0.9
3,751,264 - DvMF_2975 0.66 +1.5
3,751,285 - DvMF_2975 0.70 +0.0
3,752,360 - DvMF_2977 0.55 -1.0
3,752,384 - DvMF_2977 0.57 -0.5

Or see this region's nucleotide sequence