Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2827

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2825 and DvMF_2826 are separated by 186 nucleotidesDvMF_2826 and DvMF_2827 are separated by 39 nucleotidesDvMF_2827 and DvMF_2828 overlap by 4 nucleotidesDvMF_2828 and DvMF_2829 are separated by 4 nucleotides DvMF_2825: DvMF_2825 - protein of unknown function DUF583 (RefSeq), at 3,571,652 to 3,571,993 _2825 DvMF_2826: DvMF_2826 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 3,572,180 to 3,572,596 _2826 DvMF_2827: DvMF_2827 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 3,572,636 to 3,573,205 _2827 DvMF_2828: DvMF_2828 - F0F1 ATP synthase subunit delta (RefSeq), at 3,573,202 to 3,573,753 _2828 DvMF_2829: DvMF_2829 - F0F1 ATP synthase subunit alpha (RefSeq), at 3,573,758 to 3,575,266 _2829 Position (kb) 3572 3573 3574Strain fitness (log2 ratio) -1 0 1at 3571.700 kb on - strand, within DvMF_2825at 3571.885 kb on - strand, within DvMF_2825at 3573.748 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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3,571,700 - DvMF_2825 0.14 +0.8
3,571,885 - DvMF_2825 0.68 -0.2
3,573,748 + +0.1

Or see this region's nucleotide sequence