Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2811

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2810 and DvMF_2811 overlap by 10 nucleotidesDvMF_2811 and DvMF_2812 are separated by 264 nucleotides DvMF_2810: DvMF_2810 - glutamate racemase (RefSeq), at 3,553,315 to 3,554,241 _2810 DvMF_2811: DvMF_2811 - pyridoxamine kinase (RefSeq), at 3,554,232 to 3,555,125 _2811 DvMF_2812: DvMF_2812 - protein of unknown function DUF81 (RefSeq), at 3,555,390 to 3,556,343 _2812 Position (kb) 3554 3555 3556Strain fitness (log2 ratio) -3 -2 -1 0 1at 3553.313 kb on + strandat 3553.313 kb on + strandat 3553.313 kb on + strandat 3554.261 kb on - strandat 3554.523 kb on + strand, within DvMF_2811at 3554.717 kb on + strand, within DvMF_2811at 3554.786 kb on + strand, within DvMF_2811at 3554.880 kb on + strand, within DvMF_2811at 3554.969 kb on - strand, within DvMF_2811at 3555.021 kb on - strand, within DvMF_2811at 3555.127 kb on + strandat 3555.128 kb on - strandat 3555.144 kb on + strandat 3555.146 kb on + strandat 3555.154 kb on - strandat 3555.285 kb on + strandat 3555.505 kb on - strand, within DvMF_2812at 3555.644 kb on - strand, within DvMF_2812at 3555.644 kb on - strand, within DvMF_2812at 3555.995 kb on - strand, within DvMF_2812at 3556.106 kb on - strand, within DvMF_2812

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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3,553,313 + -0.2
3,553,313 + -0.7
3,553,313 + +0.0
3,554,261 - +0.2
3,554,523 + DvMF_2811 0.33 -2.0
3,554,717 + DvMF_2811 0.54 -2.8
3,554,786 + DvMF_2811 0.62 -2.4
3,554,880 + DvMF_2811 0.72 -1.7
3,554,969 - DvMF_2811 0.82 -2.3
3,555,021 - DvMF_2811 0.88 +0.2
3,555,127 + -0.2
3,555,128 - -0.1
3,555,144 + -1.1
3,555,146 + -1.1
3,555,154 - -1.3
3,555,285 + -1.0
3,555,505 - DvMF_2812 0.12 +0.3
3,555,644 - DvMF_2812 0.27 -0.5
3,555,644 - DvMF_2812 0.27 -0.3
3,555,995 - DvMF_2812 0.63 -2.2
3,556,106 - DvMF_2812 0.75 -2.1

Or see this region's nucleotide sequence