Experiment: MoYLS4 with methylglyoxal 0.031 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2735 and DvMF_2736 are separated by 56 nucleotides DvMF_2736 and DvMF_2737 are separated by 13 nucleotides
DvMF_2735: DvMF_2735 - TPR repeat-containing protein (RefSeq), at 3,460,512 to 3,461,666
_2735
DvMF_2736: DvMF_2736 - type II secretion system protein (RefSeq), at 3,461,723 to 3,462,703
_2736
DvMF_2737: DvMF_2737 - type II secretion system protein (RefSeq), at 3,462,717 to 3,463,682
_2737
Position (kb)
3461
3462
3463 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3460.795 kb on - strand, within DvMF_2735 at 3460.820 kb on + strand, within DvMF_2735 at 3460.940 kb on + strand, within DvMF_2735 at 3461.025 kb on - strand, within DvMF_2735 at 3461.034 kb on - strand, within DvMF_2735 at 3461.106 kb on - strand, within DvMF_2735 at 3461.110 kb on + strand, within DvMF_2735 at 3461.111 kb on - strand, within DvMF_2735 at 3461.428 kb on - strand, within DvMF_2735 at 3461.572 kb on - strand at 3461.630 kb on + strand at 3461.630 kb on + strand at 3461.638 kb on - strand at 3461.802 kb on + strand at 3461.892 kb on - strand, within DvMF_2736 at 3462.034 kb on + strand, within DvMF_2736 at 3462.116 kb on + strand, within DvMF_2736 at 3462.124 kb on - strand, within DvMF_2736 at 3462.266 kb on - strand, within DvMF_2736 at 3462.278 kb on + strand, within DvMF_2736 at 3462.348 kb on - strand, within DvMF_2736 at 3462.348 kb on - strand, within DvMF_2736 at 3462.454 kb on + strand, within DvMF_2736 at 3462.551 kb on + strand, within DvMF_2736 at 3462.634 kb on - strand at 3462.799 kb on - strand at 3462.828 kb on - strand, within DvMF_2737 at 3462.870 kb on + strand, within DvMF_2737 at 3462.937 kb on + strand, within DvMF_2737 at 3463.069 kb on - strand, within DvMF_2737 at 3463.503 kb on - strand, within DvMF_2737 at 3463.567 kb on - strand, within DvMF_2737 at 3463.616 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 % remove 3,460,795 - DvMF_2735 0.25 -0.5 3,460,820 + DvMF_2735 0.27 -0.4 3,460,940 + DvMF_2735 0.37 -0.3 3,461,025 - DvMF_2735 0.44 -0.2 3,461,034 - DvMF_2735 0.45 -0.7 3,461,106 - DvMF_2735 0.51 +0.8 3,461,110 + DvMF_2735 0.52 -0.7 3,461,111 - DvMF_2735 0.52 -2.1 3,461,428 - DvMF_2735 0.79 -0.4 3,461,572 - -1.1 3,461,630 + -0.8 3,461,630 + -3.5 3,461,638 - -0.6 3,461,802 + -0.4 3,461,892 - DvMF_2736 0.17 -2.1 3,462,034 + DvMF_2736 0.32 +0.4 3,462,116 + DvMF_2736 0.40 -0.7 3,462,124 - DvMF_2736 0.41 -0.4 3,462,266 - DvMF_2736 0.55 -1.0 3,462,278 + DvMF_2736 0.57 -0.3 3,462,348 - DvMF_2736 0.64 -0.1 3,462,348 - DvMF_2736 0.64 -2.5 3,462,454 + DvMF_2736 0.75 -1.3 3,462,551 + DvMF_2736 0.84 +0.6 3,462,634 - -0.3 3,462,799 - -0.7 3,462,828 - DvMF_2737 0.11 -2.1 3,462,870 + DvMF_2737 0.16 -0.7 3,462,937 + DvMF_2737 0.23 -1.0 3,463,069 - DvMF_2737 0.36 -1.7 3,463,503 - DvMF_2737 0.81 -0.6 3,463,567 - DvMF_2737 0.88 -1.1 3,463,616 + -0.9
Or see this region's nucleotide sequence