Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2735

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2733 and DvMF_2734 are separated by 64 nucleotidesDvMF_2734 and DvMF_2735 are separated by 130 nucleotidesDvMF_2735 and DvMF_2736 are separated by 56 nucleotides DvMF_2733: DvMF_2733 - von Willebrand factor type A (RefSeq), at 3,458,659 to 3,459,879 _2733 DvMF_2734: DvMF_2734 - TadE family protein (RefSeq), at 3,459,944 to 3,460,381 _2734 DvMF_2735: DvMF_2735 - TPR repeat-containing protein (RefSeq), at 3,460,512 to 3,461,666 _2735 DvMF_2736: DvMF_2736 - type II secretion system protein (RefSeq), at 3,461,723 to 3,462,703 _2736 Position (kb) 3460 3461 3462Strain fitness (log2 ratio) -3 -2 -1 0 1at 3459.554 kb on + strand, within DvMF_2733at 3459.578 kb on + strand, within DvMF_2733at 3459.586 kb on - strand, within DvMF_2733at 3459.645 kb on - strand, within DvMF_2733at 3459.688 kb on - strand, within DvMF_2733at 3459.709 kb on - strand, within DvMF_2733at 3459.767 kb on - strandat 3459.838 kb on + strandat 3460.582 kb on - strandat 3460.639 kb on - strand, within DvMF_2735at 3460.795 kb on - strand, within DvMF_2735at 3460.820 kb on + strand, within DvMF_2735at 3460.940 kb on + strand, within DvMF_2735at 3461.025 kb on - strand, within DvMF_2735at 3461.034 kb on - strand, within DvMF_2735at 3461.106 kb on - strand, within DvMF_2735at 3461.110 kb on + strand, within DvMF_2735at 3461.111 kb on - strand, within DvMF_2735at 3461.428 kb on - strand, within DvMF_2735at 3461.572 kb on - strandat 3461.630 kb on + strandat 3461.630 kb on + strandat 3461.638 kb on - strandat 3461.802 kb on + strandat 3461.892 kb on - strand, within DvMF_2736at 3462.034 kb on + strand, within DvMF_2736at 3462.116 kb on + strand, within DvMF_2736at 3462.124 kb on - strand, within DvMF_2736at 3462.266 kb on - strand, within DvMF_2736at 3462.278 kb on + strand, within DvMF_2736at 3462.348 kb on - strand, within DvMF_2736at 3462.348 kb on - strand, within DvMF_2736at 3462.454 kb on + strand, within DvMF_2736at 3462.551 kb on + strand, within DvMF_2736at 3462.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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3,459,554 + DvMF_2733 0.73 -0.5
3,459,578 + DvMF_2733 0.75 -0.9
3,459,586 - DvMF_2733 0.76 -2.3
3,459,645 - DvMF_2733 0.81 -3.0
3,459,688 - DvMF_2733 0.84 -1.8
3,459,709 - DvMF_2733 0.86 -0.7
3,459,767 - -0.8
3,459,838 + -0.8
3,460,582 - -1.5
3,460,639 - DvMF_2735 0.11 -1.0
3,460,795 - DvMF_2735 0.25 -0.5
3,460,820 + DvMF_2735 0.27 -0.4
3,460,940 + DvMF_2735 0.37 -0.3
3,461,025 - DvMF_2735 0.44 -0.2
3,461,034 - DvMF_2735 0.45 -0.7
3,461,106 - DvMF_2735 0.51 +0.8
3,461,110 + DvMF_2735 0.52 -0.7
3,461,111 - DvMF_2735 0.52 -2.1
3,461,428 - DvMF_2735 0.79 -0.4
3,461,572 - -1.1
3,461,630 + -0.8
3,461,630 + -3.5
3,461,638 - -0.6
3,461,802 + -0.4
3,461,892 - DvMF_2736 0.17 -2.1
3,462,034 + DvMF_2736 0.32 +0.4
3,462,116 + DvMF_2736 0.40 -0.7
3,462,124 - DvMF_2736 0.41 -0.4
3,462,266 - DvMF_2736 0.55 -1.0
3,462,278 + DvMF_2736 0.57 -0.3
3,462,348 - DvMF_2736 0.64 -0.1
3,462,348 - DvMF_2736 0.64 -2.5
3,462,454 + DvMF_2736 0.75 -1.3
3,462,551 + DvMF_2736 0.84 +0.6
3,462,634 - -0.3

Or see this region's nucleotide sequence