Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2664

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2663 and DvMF_2664 are separated by 664 nucleotidesDvMF_2664 and DvMF_2665 are separated by 129 nucleotides DvMF_2663: DvMF_2663 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,363,574 to 3,365,157 _2663 DvMF_2664: DvMF_2664 - PDZ/DHR/GLGF domain protein (RefSeq), at 3,365,822 to 3,367,024 _2664 DvMF_2665: DvMF_2665 - hypothetical protein (RefSeq), at 3,367,154 to 3,368,788 _2665 Position (kb) 3365 3366 3367 3368Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3365.080 kb on - strandat 3365.152 kb on + strandat 3365.152 kb on + strandat 3365.236 kb on + strandat 3365.334 kb on - strandat 3365.334 kb on - strandat 3365.369 kb on - strandat 3365.435 kb on - strandat 3365.814 kb on + strandat 3366.051 kb on + strand, within DvMF_2664at 3366.057 kb on - strand, within DvMF_2664at 3366.168 kb on - strand, within DvMF_2664at 3366.255 kb on - strand, within DvMF_2664at 3366.406 kb on + strand, within DvMF_2664at 3366.414 kb on - strand, within DvMF_2664at 3366.414 kb on - strand, within DvMF_2664at 3366.483 kb on + strand, within DvMF_2664at 3366.667 kb on + strand, within DvMF_2664at 3366.675 kb on - strand, within DvMF_2664at 3366.738 kb on + strand, within DvMF_2664at 3366.811 kb on - strand, within DvMF_2664at 3366.816 kb on - strand, within DvMF_2664at 3366.846 kb on - strand, within DvMF_2664at 3367.070 kb on - strandat 3367.431 kb on + strand, within DvMF_2665at 3367.953 kb on - strand, within DvMF_2665at 3367.953 kb on - strand, within DvMF_2665

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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3,365,080 - -1.8
3,365,152 + -0.7
3,365,152 + -0.5
3,365,236 + -0.1
3,365,334 - -0.8
3,365,334 - -4.2
3,365,369 - -0.5
3,365,435 - -0.6
3,365,814 + -2.0
3,366,051 + DvMF_2664 0.19 +0.2
3,366,057 - DvMF_2664 0.20 +0.1
3,366,168 - DvMF_2664 0.29 +0.0
3,366,255 - DvMF_2664 0.36 -0.9
3,366,406 + DvMF_2664 0.49 -0.7
3,366,414 - DvMF_2664 0.49 -0.4
3,366,414 - DvMF_2664 0.49 -0.9
3,366,483 + DvMF_2664 0.55 -5.3
3,366,667 + DvMF_2664 0.70 -0.8
3,366,675 - DvMF_2664 0.71 -0.6
3,366,738 + DvMF_2664 0.76 -1.0
3,366,811 - DvMF_2664 0.82 +0.1
3,366,816 - DvMF_2664 0.83 -1.1
3,366,846 - DvMF_2664 0.85 -0.6
3,367,070 - -1.8
3,367,431 + DvMF_2665 0.17 -2.3
3,367,953 - DvMF_2665 0.49 -1.1
3,367,953 - DvMF_2665 0.49 -1.5

Or see this region's nucleotide sequence