Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2565
Experiment: MoYLS4 with methylglyoxal 0.031 %
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with methylglyoxal 0.031 % |
---|---|---|---|---|---|
remove | |||||
3,241,214 | + | DvMF_2564 | 0.69 | -0.5 | |
3,241,229 | + | DvMF_2564 | 0.70 | +0.2 | |
3,241,263 | - | DvMF_2564 | 0.71 | -2.0 | |
3,241,347 | + | DvMF_2564 | 0.74 | -3.5 | |
3,241,469 | - | DvMF_2564 | 0.79 | -1.3 | |
3,241,609 | + | DvMF_2564 | 0.85 | -0.5 | |
3,242,059 | + | -3.7 | |||
3,242,060 | + | -1.2 | |||
3,242,242 | + | -4.0 | |||
3,242,390 | - | DvMF_2565 | 0.23 | -0.4 | |
3,242,622 | + | DvMF_2565 | 0.46 | -1.6 | |
3,243,046 | + | DvMF_2565 | 0.87 | -0.8 | |
3,243,054 | - | DvMF_2565 | 0.87 | -1.3 | |
3,243,140 | + | +0.9 | |||
3,243,335 | + | -3.5 | |||
3,243,335 | + | -2.5 | |||
3,243,366 | - | +0.2 | |||
3,243,456 | - | DvMF_2566 | 0.14 | +1.1 | |
3,243,511 | - | DvMF_2566 | 0.19 | -2.0 | |
3,243,610 | - | DvMF_2566 | 0.27 | -0.4 | |
3,243,637 | - | DvMF_2566 | 0.29 | -0.8 | |
3,243,637 | - | DvMF_2566 | 0.29 | -0.1 | |
3,243,898 | - | DvMF_2566 | 0.50 | -0.2 | |
3,243,984 | + | DvMF_2566 | 0.57 | -0.6 | |
3,243,992 | - | DvMF_2566 | 0.58 | -1.0 | |
3,244,116 | - | DvMF_2566 | 0.67 | -0.9 |
Or see this region's nucleotide sequence