Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2510

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2508 and rpsO are separated by 230 nucleotidesrpsO and DvMF_2510 are separated by 23 nucleotidesDvMF_2510 and DvMF_2511 are separated by 5 nucleotides DvMF_2508: DvMF_2508 - polynucleotide phosphorylase/polyadenylase (RefSeq), at 3,162,451 to 3,164,721 _2508 DvMF_2509: rpsO - 30S ribosomal protein S15 (RefSeq), at 3,164,952 to 3,165,221 rpsO DvMF_2510: DvMF_2510 - tRNA pseudouridine synthase B (RefSeq), at 3,165,245 to 3,166,171 _2510 DvMF_2511: DvMF_2511 - phosphoesterase RecJ domain protein (RefSeq), at 3,166,177 to 3,167,169 _2511 Position (kb) 3165 3166 3167Strain fitness (log2 ratio) -2 -1 0 1at 3164.870 kb on - strandat 3165.830 kb on - strand, within DvMF_2510at 3165.902 kb on + strand, within DvMF_2510at 3166.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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3,164,870 - -2.0
3,165,830 - DvMF_2510 0.63 +0.6
3,165,902 + DvMF_2510 0.71 +1.1
3,166,175 - -0.7

Or see this region's nucleotide sequence