Experiment: MoYLS4 with methylglyoxal 0.031 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2246 and DvMF_2247 overlap by 14 nucleotides DvMF_2247 and DvMF_2248 are separated by 311 nucleotides DvMF_2248 and DvMF_2249 are separated by 402 nucleotides
DvMF_2246: DvMF_2246 - transcriptional regulator, LysR family (RefSeq), at 2,820,336 to 2,821,301
_2246
DvMF_2247: DvMF_2247 - channel protein, hemolysin III family (RefSeq), at 2,821,288 to 2,821,935
_2247
DvMF_2248: DvMF_2248 - signal recognition particle-docking protein FtsY (RefSeq), at 2,822,247 to 2,823,641
_2248
DvMF_2249: DvMF_2249 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 2,824,044 to 2,826,359
_2249
Position (kb)
2822
2823
2824 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2821.256 kb on + strand at 2821.317 kb on - strand at 2821.655 kb on - strand, within DvMF_2247 at 2821.904 kb on - strand at 2822.203 kb on + strand at 2824.047 kb on + strand at 2824.288 kb on + strand, within DvMF_2249 at 2824.361 kb on - strand, within DvMF_2249 at 2824.365 kb on + strand, within DvMF_2249 at 2824.366 kb on - strand, within DvMF_2249 at 2824.462 kb on - strand, within DvMF_2249
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 % remove 2,821,256 + +1.0 2,821,317 - -0.2 2,821,655 - DvMF_2247 0.57 +1.1 2,821,904 - -4.0 2,822,203 + -1.3 2,824,047 + -0.5 2,824,288 + DvMF_2249 0.11 -1.4 2,824,361 - DvMF_2249 0.14 -2.6 2,824,365 + DvMF_2249 0.14 -3.1 2,824,366 - DvMF_2249 0.14 -3.6 2,824,462 - DvMF_2249 0.18 -2.5
Or see this region's nucleotide sequence