Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1713

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1712 and DvMF_1713 are separated by 393 nucleotidesDvMF_1713 and DvMF_1714 are separated by 254 nucleotides DvMF_1712: DvMF_1712 - hypothetical protein (RefSeq), at 2,091,451 to 2,091,708 _1712 DvMF_1713: DvMF_1713 - DNA polymerase I (RefSeq), at 2,092,102 to 2,094,720 _1713 DvMF_1714: DvMF_1714 - protein of unknown function Met10 (RefSeq), at 2,094,975 to 2,096,189 _1714 Position (kb) 2092 2093 2094 2095Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2091.133 kb on - strandat 2091.401 kb on - strandat 2091.436 kb on + strandat 2091.459 kb on - strandat 2091.459 kb on - strandat 2091.516 kb on + strand, within DvMF_1712at 2091.853 kb on + strandat 2091.861 kb on - strandat 2091.861 kb on - strandat 2091.895 kb on + strandat 2094.518 kb on + strandat 2094.799 kb on + strandat 2094.799 kb on + strandat 2095.088 kb on + strandat 2095.149 kb on - strand, within DvMF_1714at 2095.267 kb on - strand, within DvMF_1714at 2095.315 kb on - strand, within DvMF_1714at 2095.317 kb on + strand, within DvMF_1714

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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2,091,133 - -1.0
2,091,401 - -0.4
2,091,436 + -3.5
2,091,459 - +0.5
2,091,459 - -1.7
2,091,516 + DvMF_1712 0.25 -0.2
2,091,853 + -1.1
2,091,861 - +0.1
2,091,861 - -0.6
2,091,895 + -0.8
2,094,518 + +0.4
2,094,799 + -0.5
2,094,799 + -0.5
2,095,088 + -4.7
2,095,149 - DvMF_1714 0.14 +0.4
2,095,267 - DvMF_1714 0.24 -1.2
2,095,315 - DvMF_1714 0.28 -0.2
2,095,317 + DvMF_1714 0.28 -0.5

Or see this region's nucleotide sequence