Experiment: MoYLS4 with methylglyoxal 0.031 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1632 and DvMF_1633 are separated by 366 nucleotides DvMF_1633 and DvMF_1634 are separated by 327 nucleotides DvMF_1634 and DvMF_1635 overlap by 17 nucleotides DvMF_1635 and DvMF_1636 are separated by 51 nucleotides
DvMF_1632: DvMF_1632 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,011,681 to 2,013,288
_1632
DvMF_1633: DvMF_1633 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 2,013,655 to 2,015,985
_1633
DvMF_1634: DvMF_1634 - phage protein (RefSeq), at 2,016,313 to 2,016,570
_1634
DvMF_1635: DvMF_1635 - transcriptional regulator, XRE family (RefSeq), at 2,016,554 to 2,016,892
_1635
DvMF_1636: DvMF_1636 - hypothetical protein (RefSeq), at 2,016,944 to 2,017,444
_1636
Position (kb)
2013
2014
2015
2016 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2012.657 kb on + strand, within DvMF_1632 at 2012.714 kb on - strand, within DvMF_1632 at 2012.825 kb on + strand, within DvMF_1632 at 2012.833 kb on - strand, within DvMF_1632 at 2012.833 kb on - strand, within DvMF_1632 at 2012.833 kb on - strand, within DvMF_1632 at 2013.161 kb on + strand at 2013.161 kb on + strand at 2013.222 kb on - strand at 2013.304 kb on - strand at 2013.400 kb on + strand at 2013.599 kb on + strand at 2013.745 kb on + strand at 2013.968 kb on + strand, within DvMF_1633 at 2013.996 kb on - strand, within DvMF_1633 at 2014.089 kb on - strand, within DvMF_1633 at 2014.119 kb on - strand, within DvMF_1633 at 2014.362 kb on - strand, within DvMF_1633 at 2014.383 kb on - strand, within DvMF_1633 at 2014.506 kb on + strand, within DvMF_1633 at 2014.563 kb on + strand, within DvMF_1633 at 2014.810 kb on + strand, within DvMF_1633 at 2014.843 kb on + strand, within DvMF_1633 at 2014.927 kb on - strand, within DvMF_1633 at 2015.346 kb on - strand at 2015.671 kb on + strand, within DvMF_1633 at 2015.679 kb on - strand, within DvMF_1633 at 2015.681 kb on + strand, within DvMF_1633 at 2015.914 kb on + strand at 2015.979 kb on - strand at 2016.431 kb on + strand, within DvMF_1634 at 2016.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 % remove 2,012,657 + DvMF_1632 0.61 -0.4 2,012,714 - DvMF_1632 0.64 -1.1 2,012,825 + DvMF_1632 0.71 -0.1 2,012,833 - DvMF_1632 0.72 -0.4 2,012,833 - DvMF_1632 0.72 -0.7 2,012,833 - DvMF_1632 0.72 +0.2 2,013,161 + -1.2 2,013,161 + -0.9 2,013,222 - +0.5 2,013,304 - -0.6 2,013,400 + -1.3 2,013,599 + +0.4 2,013,745 + +0.1 2,013,968 + DvMF_1633 0.13 -2.5 2,013,996 - DvMF_1633 0.15 -0.8 2,014,089 - DvMF_1633 0.19 +0.5 2,014,119 - DvMF_1633 0.20 -1.6 2,014,362 - DvMF_1633 0.30 +0.6 2,014,383 - DvMF_1633 0.31 -0.4 2,014,506 + DvMF_1633 0.37 -0.1 2,014,563 + DvMF_1633 0.39 -1.5 2,014,810 + DvMF_1633 0.50 -0.3 2,014,843 + DvMF_1633 0.51 +0.1 2,014,927 - DvMF_1633 0.55 -0.3 2,015,346 - +1.4 2,015,671 + DvMF_1633 0.86 -0.0 2,015,679 - DvMF_1633 0.87 -0.7 2,015,681 + DvMF_1633 0.87 -3.4 2,015,914 + -4.5 2,015,979 - -2.4 2,016,431 + DvMF_1634 0.46 -1.0 2,016,900 - -1.0
Or see this region's nucleotide sequence