Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1354

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1354 and DvMF_1355 are separated by 252 nucleotides DvMF_1354: DvMF_1354 - protein of unknown function DUF748 (RefSeq), at 1,652,559 to 1,656,845 _1354 DvMF_1355: DvMF_1355 - hypothetical protein (RefSeq), at 1,657,098 to 1,658,600 _1355 Position (kb) 1652 1653 1654 1655 1656 1657Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1651.674 kb on + strandat 1651.739 kb on + strandat 1651.743 kb on + strandat 1651.928 kb on + strandat 1652.042 kb on + strandat 1652.149 kb on - strandat 1652.659 kb on - strandat 1652.704 kb on + strandat 1652.704 kb on + strandat 1652.704 kb on + strandat 1652.704 kb on + strandat 1652.704 kb on + strandat 1652.704 kb on + strandat 1652.704 kb on + strandat 1652.704 kb on + strandat 1652.704 kb on + strandat 1652.712 kb on - strandat 1652.712 kb on - strandat 1652.712 kb on - strandat 1652.712 kb on - strandat 1653.386 kb on + strand, within DvMF_1354at 1653.910 kb on - strand, within DvMF_1354at 1653.988 kb on - strand, within DvMF_1354at 1654.394 kb on + strand, within DvMF_1354at 1654.431 kb on - strand, within DvMF_1354at 1654.718 kb on + strand, within DvMF_1354at 1654.734 kb on - strand, within DvMF_1354at 1654.897 kb on - strand, within DvMF_1354at 1654.999 kb on - strand, within DvMF_1354at 1654.999 kb on - strand, within DvMF_1354at 1655.068 kb on + strand, within DvMF_1354at 1655.192 kb on + strand, within DvMF_1354at 1655.269 kb on + strand, within DvMF_1354at 1655.433 kb on - strand, within DvMF_1354at 1655.458 kb on - strand, within DvMF_1354at 1655.710 kb on - strand, within DvMF_1354at 1655.940 kb on - strand, within DvMF_1354at 1656.122 kb on - strand, within DvMF_1354at 1656.183 kb on - strand, within DvMF_1354at 1656.228 kb on + strand, within DvMF_1354at 1656.286 kb on + strand, within DvMF_1354at 1656.459 kb on - strandat 1656.459 kb on - strandat 1657.271 kb on + strand, within DvMF_1355at 1657.785 kb on + strand, within DvMF_1355at 1657.793 kb on - strand, within DvMF_1355

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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1,651,674 + -1.0
1,651,739 + +0.1
1,651,743 + -0.8
1,651,928 + -1.7
1,652,042 + +0.7
1,652,149 - +0.2
1,652,659 - -4.1
1,652,704 + -0.9
1,652,704 + -1.1
1,652,704 + -0.8
1,652,704 + +0.3
1,652,704 + -0.6
1,652,704 + +1.7
1,652,704 + -2.3
1,652,704 + -0.7
1,652,704 + -0.4
1,652,712 - -3.3
1,652,712 - -1.7
1,652,712 - -1.1
1,652,712 - -1.0
1,653,386 + DvMF_1354 0.19 -2.2
1,653,910 - DvMF_1354 0.32 -1.3
1,653,988 - DvMF_1354 0.33 -2.1
1,654,394 + DvMF_1354 0.43 -0.3
1,654,431 - DvMF_1354 0.44 -0.6
1,654,718 + DvMF_1354 0.50 -2.4
1,654,734 - DvMF_1354 0.51 -0.3
1,654,897 - DvMF_1354 0.55 -0.7
1,654,999 - DvMF_1354 0.57 -0.3
1,654,999 - DvMF_1354 0.57 -0.3
1,655,068 + DvMF_1354 0.59 -0.7
1,655,192 + DvMF_1354 0.61 -1.6
1,655,269 + DvMF_1354 0.63 -0.9
1,655,433 - DvMF_1354 0.67 -0.9
1,655,458 - DvMF_1354 0.68 -1.1
1,655,710 - DvMF_1354 0.74 -0.4
1,655,940 - DvMF_1354 0.79 -1.0
1,656,122 - DvMF_1354 0.83 +0.4
1,656,183 - DvMF_1354 0.85 -0.2
1,656,228 + DvMF_1354 0.86 -0.8
1,656,286 + DvMF_1354 0.87 -3.1
1,656,459 - -0.3
1,656,459 - +0.3
1,657,271 + DvMF_1355 0.12 -0.1
1,657,785 + DvMF_1355 0.46 -0.7
1,657,793 - DvMF_1355 0.46 -0.7

Or see this region's nucleotide sequence