Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1333

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1332 and DvMF_1333 are separated by 284 nucleotidesDvMF_1333 and DvMF_1334 are separated by 165 nucleotides DvMF_1332: DvMF_1332 - hypothetical protein (RefSeq), at 1,627,463 to 1,628,122 _1332 DvMF_1333: DvMF_1333 - hypothetical protein (RefSeq), at 1,628,407 to 1,628,994 _1333 DvMF_1334: DvMF_1334 - response regulator receiver protein (RefSeq), at 1,629,160 to 1,630,653 _1334 Position (kb) 1628 1629Strain fitness (log2 ratio) -3 -2 -1 0 1at 1627.733 kb on + strand, within DvMF_1332at 1627.835 kb on + strand, within DvMF_1332at 1628.282 kb on - strandat 1628.507 kb on - strand, within DvMF_1333at 1628.974 kb on + strandat 1629.180 kb on + strandat 1629.269 kb on - strandat 1629.512 kb on + strand, within DvMF_1334at 1629.560 kb on - strand, within DvMF_1334at 1629.615 kb on + strand, within DvMF_1334at 1629.629 kb on + strand, within DvMF_1334at 1629.634 kb on + strand, within DvMF_1334at 1629.779 kb on - strand, within DvMF_1334at 1629.848 kb on - strand, within DvMF_1334

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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1,627,733 + DvMF_1332 0.41 -1.1
1,627,835 + DvMF_1332 0.56 +0.5
1,628,282 - -3.4
1,628,507 - DvMF_1333 0.17 -0.4
1,628,974 + -0.8
1,629,180 + -0.8
1,629,269 - -0.5
1,629,512 + DvMF_1334 0.24 -1.9
1,629,560 - DvMF_1334 0.27 +1.1
1,629,615 + DvMF_1334 0.30 -0.1
1,629,629 + DvMF_1334 0.31 -0.6
1,629,634 + DvMF_1334 0.32 -0.2
1,629,779 - DvMF_1334 0.41 -0.6
1,629,848 - DvMF_1334 0.46 -0.8

Or see this region's nucleotide sequence