Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1309

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1307 and DvMF_1308 overlap by 17 nucleotidesDvMF_1308 and DvMF_1309 are separated by 77 nucleotidesDvMF_1309 and DvMF_R0037 are separated by 269 nucleotidesDvMF_R0037 and DvMF_1310 are separated by 618 nucleotides DvMF_1307: DvMF_1307 - hypothetical protein (RefSeq), at 1,596,523 to 1,596,708 _1307 DvMF_1308: DvMF_1308 - DNA methylase N-4/N-6 domain protein (RefSeq), at 1,596,692 to 1,597,453 _1308 DvMF_1309: DvMF_1309 - hypothetical protein (RefSeq), at 1,597,531 to 1,598,331 _1309 DvMF_R0037: DvMF_R0037 - tRNA-Arg (RefSeq), at 1,598,601 to 1,598,677 _R0037 DvMF_1310: DvMF_1310 - FolC bifunctional protein (RefSeq), at 1,599,296 to 1,600,795 _1310 Position (kb) 1597 1598 1599Strain fitness (log2 ratio) -2 -1 0 1at 1596.598 kb on - strand, within DvMF_1307at 1596.755 kb on - strandat 1596.870 kb on - strand, within DvMF_1308at 1596.945 kb on + strand, within DvMF_1308at 1596.953 kb on - strand, within DvMF_1308at 1597.088 kb on - strand, within DvMF_1308at 1597.156 kb on - strand, within DvMF_1308at 1597.251 kb on - strand, within DvMF_1308at 1597.365 kb on + strand, within DvMF_1308at 1597.772 kb on + strand, within DvMF_1309at 1597.772 kb on + strand, within DvMF_1309at 1597.814 kb on + strand, within DvMF_1309at 1597.918 kb on + strand, within DvMF_1309at 1597.982 kb on - strand, within DvMF_1309at 1598.263 kb on - strandat 1598.263 kb on - strandat 1598.405 kb on - strandat 1598.407 kb on + strandat 1598.410 kb on - strandat 1598.456 kb on + strandat 1598.734 kb on + strandat 1598.762 kb on - strandat 1598.768 kb on - strandat 1598.907 kb on - strandat 1598.918 kb on + strandat 1598.918 kb on + strandat 1598.926 kb on - strandat 1598.940 kb on + strandat 1598.953 kb on - strandat 1599.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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1,596,598 - DvMF_1307 0.40 -1.1
1,596,755 - -0.8
1,596,870 - DvMF_1308 0.23 -0.2
1,596,945 + DvMF_1308 0.33 -0.8
1,596,953 - DvMF_1308 0.34 -0.1
1,597,088 - DvMF_1308 0.52 +0.4
1,597,156 - DvMF_1308 0.61 +0.8
1,597,251 - DvMF_1308 0.73 +1.1
1,597,365 + DvMF_1308 0.88 -0.1
1,597,772 + DvMF_1309 0.30 -0.0
1,597,772 + DvMF_1309 0.30 -0.4
1,597,814 + DvMF_1309 0.35 -0.2
1,597,918 + DvMF_1309 0.48 +0.7
1,597,982 - DvMF_1309 0.56 -0.7
1,598,263 - +0.1
1,598,263 - -0.8
1,598,405 - -2.0
1,598,407 + -0.2
1,598,410 - +0.9
1,598,456 + +0.3
1,598,734 + -0.3
1,598,762 - -0.5
1,598,768 - -0.5
1,598,907 - -1.0
1,598,918 + -1.0
1,598,918 + +0.1
1,598,926 - -1.0
1,598,940 + -0.6
1,598,953 - -2.2
1,599,162 - -1.7

Or see this region's nucleotide sequence