Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1248

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1247 and DvMF_1248 overlap by 8 nucleotidesDvMF_1248 and DvMF_1249 are separated by 200 nucleotides DvMF_1247: DvMF_1247 - alpha/beta hydrolase fold protein (RefSeq), at 1,541,573 to 1,542,517 _1247 DvMF_1248: DvMF_1248 - Mur ligase middle domain protein (RefSeq), at 1,542,510 to 1,544,150 _1248 DvMF_1249: DvMF_1249 - diguanylate cyclase (RefSeq), at 1,544,351 to 1,545,502 _1249 Position (kb) 1542 1543 1544 1545Strain fitness (log2 ratio) -1 0 1at 1544.731 kb on - strand, within DvMF_1249at 1544.891 kb on - strand, within DvMF_1249at 1544.911 kb on - strand, within DvMF_1249

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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1,544,731 - DvMF_1249 0.33 -0.2
1,544,891 - DvMF_1249 0.47 -0.1
1,544,911 - DvMF_1249 0.49 -0.5

Or see this region's nucleotide sequence