Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1100

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1099 and DvMF_1100 are separated by 18 nucleotidesDvMF_1100 and DvMF_1101 are separated by 569 nucleotides DvMF_1099: DvMF_1099 - drug resistance transporter, EmrB/QacA subfamily (RefSeq), at 1,345,563 to 1,347,122 _1099 DvMF_1100: DvMF_1100 - secretion protein HlyD family protein (RefSeq), at 1,347,141 to 1,348,472 _1100 DvMF_1101: DvMF_1101 - extracellular solute-binding protein family 3 (RefSeq), at 1,349,042 to 1,349,929 _1101 Position (kb) 1347 1348 1349Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1346.363 kb on + strand, within DvMF_1099at 1346.501 kb on - strand, within DvMF_1099at 1346.575 kb on + strand, within DvMF_1099at 1346.577 kb on - strand, within DvMF_1099at 1346.577 kb on - strand, within DvMF_1099at 1346.854 kb on - strand, within DvMF_1099at 1347.268 kb on - strandat 1347.319 kb on - strand, within DvMF_1100at 1347.423 kb on - strand, within DvMF_1100at 1347.524 kb on - strand, within DvMF_1100at 1347.618 kb on - strand, within DvMF_1100at 1347.817 kb on + strand, within DvMF_1100at 1348.446 kb on + strandat 1348.486 kb on - strandat 1349.277 kb on + strand, within DvMF_1101at 1349.298 kb on + strand, within DvMF_1101at 1349.401 kb on + strand, within DvMF_1101at 1349.416 kb on + strand, within DvMF_1101

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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1,346,363 + DvMF_1099 0.51 -0.8
1,346,501 - DvMF_1099 0.60 -0.9
1,346,575 + DvMF_1099 0.65 -3.2
1,346,577 - DvMF_1099 0.65 -2.9
1,346,577 - DvMF_1099 0.65 -4.2
1,346,854 - DvMF_1099 0.83 -0.6
1,347,268 - -0.1
1,347,319 - DvMF_1100 0.13 -0.7
1,347,423 - DvMF_1100 0.21 -0.2
1,347,524 - DvMF_1100 0.29 -4.0
1,347,618 - DvMF_1100 0.36 -2.6
1,347,817 + DvMF_1100 0.51 -1.9
1,348,446 + -1.3
1,348,486 - +0.6
1,349,277 + DvMF_1101 0.26 -0.2
1,349,298 + DvMF_1101 0.29 +0.0
1,349,401 + DvMF_1101 0.40 +0.3
1,349,416 + DvMF_1101 0.42 +0.2

Or see this region's nucleotide sequence