Experiment: MoYLS4 with methylglyoxal 0.031 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0741 and DvMF_0742 are separated by 3 nucleotides DvMF_0742 and DvMF_0743 are separated by 161 nucleotides DvMF_0743 and DvMF_0744 are separated by 20 nucleotides
DvMF_0741: DvMF_0741 - hypothetical protein (RefSeq), at 888,235 to 888,609
_0741
DvMF_0742: DvMF_0742 - hypothetical protein (RefSeq), at 888,613 to 888,942
_0742
DvMF_0743: DvMF_0743 - hypothetical protein (RefSeq), at 889,104 to 891,044
_0743
DvMF_0744: DvMF_0744 - DNA circulation family protein (RefSeq), at 891,065 to 892,405
_0744
Position (kb) 889
890
891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 888.233 kb on - strand at 888.239 kb on - strand at 888.395 kb on - strand, within DvMF_0741 at 888.400 kb on - strand, within DvMF_0741 at 888.843 kb on + strand, within DvMF_0742 at 889.124 kb on + strand at 889.131 kb on - strand at 889.279 kb on - strand at 889.421 kb on + strand, within DvMF_0743 at 889.421 kb on + strand, within DvMF_0743 at 889.524 kb on - strand, within DvMF_0743 at 889.757 kb on + strand, within DvMF_0743 at 889.883 kb on - strand, within DvMF_0743 at 890.105 kb on + strand, within DvMF_0743 at 890.216 kb on + strand, within DvMF_0743 at 890.381 kb on - strand, within DvMF_0743 at 890.422 kb on - strand, within DvMF_0743 at 891.341 kb on - strand, within DvMF_0744 at 891.380 kb on - strand, within DvMF_0744 at 891.418 kb on + strand, within DvMF_0744 at 891.532 kb on - strand, within DvMF_0744 at 891.621 kb on + strand, within DvMF_0744 at 891.648 kb on + strand, within DvMF_0744 at 891.661 kb on - strand, within DvMF_0744 at 891.702 kb on - strand, within DvMF_0744 at 891.951 kb on - strand, within DvMF_0744
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 % remove 888,233 - +1.2 888,239 - -0.0 888,395 - DvMF_0741 0.43 -1.2 888,400 - DvMF_0741 0.44 +0.3 888,843 + DvMF_0742 0.70 +1.0 889,124 + +1.6 889,131 - -3.4 889,279 - -0.8 889,421 + DvMF_0743 0.16 -0.5 889,421 + DvMF_0743 0.16 +0.4 889,524 - DvMF_0743 0.22 -0.2 889,757 + DvMF_0743 0.34 -3.6 889,883 - DvMF_0743 0.40 -0.2 890,105 + DvMF_0743 0.52 +1.8 890,216 + DvMF_0743 0.57 +1.3 890,381 - DvMF_0743 0.66 +0.2 890,422 - DvMF_0743 0.68 +0.4 891,341 - DvMF_0744 0.21 +1.5 891,380 - DvMF_0744 0.23 -0.3 891,418 + DvMF_0744 0.26 -0.7 891,532 - DvMF_0744 0.35 -0.6 891,621 + DvMF_0744 0.41 +0.0 891,648 + DvMF_0744 0.43 +0.3 891,661 - DvMF_0744 0.44 -0.4 891,702 - DvMF_0744 0.48 +1.2 891,951 - DvMF_0744 0.66 +0.1
Or see this region's nucleotide sequence