Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0410

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0408 and DvMF_0409 are separated by 36 nucleotidesDvMF_0409 and DvMF_0410 are separated by 193 nucleotidesDvMF_0410 and DvMF_0411 are separated by 202 nucleotides DvMF_0408: DvMF_0408 - hypothetical protein (RefSeq), at 478,266 to 478,538 _0408 DvMF_0409: DvMF_0409 - CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase (RefSeq), at 478,575 to 479,162 _0409 DvMF_0410: DvMF_0410 - Mrp protein (RefSeq), at 479,356 to 480,252 _0410 DvMF_0411: DvMF_0411 - SNARE associated Golgi protein (RefSeq), at 480,455 to 481,042 _0411 Position (kb) 479 480 481Strain fitness (log2 ratio) -3 -2 -1 0 1at 478.398 kb on - strand, within DvMF_0408at 478.512 kb on + strandat 479.171 kb on + strandat 479.201 kb on - strandat 479.209 kb on - strandat 480.598 kb on + strand, within DvMF_0411at 480.606 kb on - strand, within DvMF_0411at 480.668 kb on + strand, within DvMF_0411at 480.804 kb on + strand, within DvMF_0411at 481.039 kb on - strandat 481.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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478,398 - DvMF_0408 0.48 -3.0
478,512 + -2.2
479,171 + +1.2
479,201 - +0.6
479,209 - -0.1
480,598 + DvMF_0411 0.24 -2.9
480,606 - DvMF_0411 0.26 -0.3
480,668 + DvMF_0411 0.36 +1.0
480,804 + DvMF_0411 0.59 -0.6
481,039 - -0.4
481,055 + -2.9

Or see this region's nucleotide sequence