Experiment: MoYLS4 with methylglyoxal 0.031 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0393 and DvMF_0394 are separated by 305 nucleotides DvMF_0394 and DvMF_0395 are separated by 138 nucleotides DvMF_0395 and DvMF_0396 overlap by 8 nucleotides
DvMF_0393: DvMF_0393 - cation diffusion facilitator family transporter (RefSeq), at 463,546 to 464,997
_0393
DvMF_0394: DvMF_0394 - protein of unknown function DUF1653 (RefSeq), at 465,303 to 465,671
_0394
DvMF_0395: DvMF_0395 - protein of unknown function DUF162 (RefSeq), at 465,810 to 466,466
_0395
DvMF_0396: DvMF_0396 - iron-sulfur cluster binding protein (RefSeq), at 466,459 to 467,886
_0396
Position (kb) 465
466
467 Strain fitness (log2 ratio) -2
-1
0
1 at 464.838 kb on + strand, within DvMF_0393 at 464.858 kb on + strand at 465.002 kb on + strand at 465.002 kb on + strand at 465.056 kb on + strand at 465.467 kb on + strand, within DvMF_0394 at 465.475 kb on - strand, within DvMF_0394 at 465.485 kb on + strand, within DvMF_0394 at 465.493 kb on - strand, within DvMF_0394 at 465.844 kb on - strand at 465.883 kb on + strand, within DvMF_0395 at 465.898 kb on + strand, within DvMF_0395 at 466.227 kb on + strand, within DvMF_0395 at 466.456 kb on + strand at 466.464 kb on - strand at 466.545 kb on - strand at 466.567 kb on - strand at 466.599 kb on + strand at 466.688 kb on + strand, within DvMF_0396 at 466.909 kb on + strand, within DvMF_0396 at 467.170 kb on + strand, within DvMF_0396 at 467.356 kb on + strand, within DvMF_0396
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 % remove 464,838 + DvMF_0393 0.89 -0.4 464,858 + -1.4 465,002 + -0.5 465,002 + -0.1 465,056 + -1.2 465,467 + DvMF_0394 0.44 -0.5 465,475 - DvMF_0394 0.47 -0.3 465,485 + DvMF_0394 0.49 -0.4 465,493 - DvMF_0394 0.51 -0.2 465,844 - +0.2 465,883 + DvMF_0395 0.11 -1.8 465,898 + DvMF_0395 0.13 -1.9 466,227 + DvMF_0395 0.63 -1.4 466,456 + -0.1 466,464 - -0.8 466,545 - -0.7 466,567 - -0.2 466,599 + -0.4 466,688 + DvMF_0396 0.16 -1.2 466,909 + DvMF_0396 0.32 +0.8 467,170 + DvMF_0396 0.50 -2.2 467,356 + DvMF_0396 0.63 -0.6
Or see this region's nucleotide sequence