Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0168

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0167 and DvMF_0168 are separated by 520 nucleotidesDvMF_0168 and DvMF_R0009 are separated by 109 nucleotidesDvMF_R0009 and DvMF_0169 are separated by 90 nucleotides DvMF_0167: DvMF_0167 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 182,620 to 184,020 _0167 DvMF_0168: DvMF_0168 - hypothetical protein (RefSeq), at 184,541 to 185,011 _0168 DvMF_R0009: DvMF_R0009 - tRNA-Ser (RefSeq), at 185,121 to 185,214 _R0009 DvMF_0169: DvMF_0169 - CMP/dCMP deaminase zinc-binding (RefSeq), at 185,305 to 185,832 _0169 Position (kb) 184 185 186Strain fitness (log2 ratio) -3 -2 -1 0 1at 184.221 kb on + strandat 184.221 kb on + strandat 184.290 kb on - strandat 184.351 kb on + strandat 184.351 kb on + strandat 184.351 kb on + strandat 184.373 kb on - strandat 184.542 kb on - strandat 184.695 kb on + strand, within DvMF_0168at 184.857 kb on + strand, within DvMF_0168at 184.862 kb on + strand, within DvMF_0168

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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184,221 + -0.4
184,221 + -0.5
184,290 - +1.6
184,351 + -0.3
184,351 + -0.9
184,351 + -1.0
184,373 - +1.4
184,542 - -0.9
184,695 + DvMF_0168 0.33 -1.0
184,857 + DvMF_0168 0.67 -3.4
184,862 + DvMF_0168 0.68 -0.1

Or see this region's nucleotide sequence