Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0039

Experiment: MoYLS4 with methylglyoxal 0.031 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0038 and DvMF_0039 overlap by 4 nucleotidesDvMF_0039 and DvMF_0040 overlap by 1 nucleotides DvMF_0038: DvMF_0038 - protein of unknown function DUF140 (RefSeq), at 50,269 to 51,414 _0038 DvMF_0039: DvMF_0039 - ABC transporter related (RefSeq), at 51,411 to 52,319 _0039 DvMF_0040: DvMF_0040 - Mammalian cell entry related domain protein (RefSeq), at 52,319 to 53,302 _0040 Position (kb) 51 52 53Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 50.548 kb on + strand, within DvMF_0038at 50.574 kb on - strand, within DvMF_0038at 50.579 kb on - strand, within DvMF_0038at 50.650 kb on + strand, within DvMF_0038at 50.661 kb on + strand, within DvMF_0038at 50.669 kb on - strand, within DvMF_0038at 50.680 kb on + strand, within DvMF_0038at 50.683 kb on - strand, within DvMF_0038at 50.688 kb on - strand, within DvMF_0038at 50.758 kb on + strand, within DvMF_0038at 50.766 kb on + strand, within DvMF_0038at 50.794 kb on - strand, within DvMF_0038at 50.833 kb on + strand, within DvMF_0038at 50.836 kb on - strand, within DvMF_0038at 50.862 kb on - strand, within DvMF_0038at 50.862 kb on - strand, within DvMF_0038at 50.880 kb on + strand, within DvMF_0038at 50.995 kb on + strand, within DvMF_0038at 51.037 kb on - strand, within DvMF_0038at 51.117 kb on + strand, within DvMF_0038at 51.118 kb on - strand, within DvMF_0038at 51.367 kb on - strandat 51.431 kb on - strandat 51.593 kb on + strand, within DvMF_0039at 51.610 kb on + strand, within DvMF_0039at 51.636 kb on + strand, within DvMF_0039at 51.860 kb on + strand, within DvMF_0039at 51.860 kb on + strand, within DvMF_0039at 51.868 kb on - strand, within DvMF_0039at 52.289 kb on - strandat 52.333 kb on + strandat 52.348 kb on - strandat 52.454 kb on - strand, within DvMF_0040at 52.829 kb on + strand, within DvMF_0040at 52.829 kb on + strand, within DvMF_0040at 52.837 kb on - strand, within DvMF_0040at 52.837 kb on - strand, within DvMF_0040at 52.860 kb on - strand, within DvMF_0040at 52.888 kb on + strand, within DvMF_0040at 53.238 kb on + strandat 53.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with methylglyoxal 0.031 %
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50,548 + DvMF_0038 0.24 +1.1
50,574 - DvMF_0038 0.27 -0.7
50,579 - DvMF_0038 0.27 -3.9
50,650 + DvMF_0038 0.33 -0.4
50,661 + DvMF_0038 0.34 -0.6
50,669 - DvMF_0038 0.35 -0.2
50,680 + DvMF_0038 0.36 -1.6
50,683 - DvMF_0038 0.36 -2.3
50,688 - DvMF_0038 0.37 -2.0
50,758 + DvMF_0038 0.43 -2.8
50,766 + DvMF_0038 0.43 +1.0
50,794 - DvMF_0038 0.46 -0.1
50,833 + DvMF_0038 0.49 -0.1
50,836 - DvMF_0038 0.49 -1.7
50,862 - DvMF_0038 0.52 -2.2
50,862 - DvMF_0038 0.52 -1.7
50,880 + DvMF_0038 0.53 -1.5
50,995 + DvMF_0038 0.63 +0.5
51,037 - DvMF_0038 0.67 -0.8
51,117 + DvMF_0038 0.74 -3.7
51,118 - DvMF_0038 0.74 -0.2
51,367 - -1.8
51,431 - -2.2
51,593 + DvMF_0039 0.20 -1.3
51,610 + DvMF_0039 0.22 -1.3
51,636 + DvMF_0039 0.25 +2.1
51,860 + DvMF_0039 0.49 +0.6
51,860 + DvMF_0039 0.49 -0.1
51,868 - DvMF_0039 0.50 -3.6
52,289 - -1.6
52,333 + -2.6
52,348 - -0.5
52,454 - DvMF_0040 0.14 +0.5
52,829 + DvMF_0040 0.52 +0.5
52,829 + DvMF_0040 0.52 -0.5
52,837 - DvMF_0040 0.53 +0.0
52,837 - DvMF_0040 0.53 +1.1
52,860 - DvMF_0040 0.55 +0.9
52,888 + DvMF_0040 0.58 -2.9
53,238 + -0.5
53,289 - +0.2

Or see this region's nucleotide sequence