Strain Fitness in Shewanella loihica PV-4 around Shew_3843

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3842 and Shew_3843 are separated by 111 nucleotidesShew_3843 and Shew_3844 are separated by 164 nucleotidesShew_3844 and Shew_3845 are separated by 33 nucleotides Shew_3842: Shew_3842 - UDP-N-acetylglucosamine pyrophosphorylase (RefSeq), at 4,574,156 to 4,575,520 _3842 Shew_3843: Shew_3843 - DsrE family protein (RefSeq), at 4,575,632 to 4,575,985 _3843 Shew_3844: Shew_3844 - F0F1 ATP synthase subunit epsilon (RefSeq), at 4,576,150 to 4,576,578 _3844 Shew_3845: Shew_3845 - F0F1 ATP synthase subunit beta (RefSeq), at 4,576,612 to 4,577,988 _3845 Position (kb) 4575 4576Strain fitness (log2 ratio) -1 0 1at 4575.606 kb on - strandat 4575.944 kb on + strand, within Shew_3843

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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4,575,606 - +0.6
4,575,944 + Shew_3843 0.88 -0.4

Or see this region's nucleotide sequence