Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2436 and Shew_2437 are separated by 105 nucleotides Shew_2437 and Shew_2438 are separated by 74 nucleotides Shew_2438 and Shew_2439 are separated by 114 nucleotides
Shew_2436: Shew_2436 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 2,863,837 to 2,865,153
_2436
Shew_2437: Shew_2437 - hypothetical protein (RefSeq), at 2,865,259 to 2,865,645
_2437
Shew_2438: Shew_2438 - hypothetical protein (RefSeq), at 2,865,720 to 2,866,430
_2438
Shew_2439: Shew_2439 - RND family efflux transporter MFP subunit (RefSeq), at 2,866,545 to 2,867,561
_2439
Position (kb)
2865
2866 Strain fitness (log2 ratio)
-1
0
1 at 2864.308 kb on - strand, within Shew_2436 at 2864.841 kb on + strand, within Shew_2436 at 2864.859 kb on + strand, within Shew_2436 at 2865.125 kb on + strand at 2865.125 kb on + strand at 2865.247 kb on - strand at 2865.381 kb on - strand, within Shew_2437 at 2865.642 kb on - strand at 2866.051 kb on - strand, within Shew_2438
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,864,308 - Shew_2436 0.36 -0.6 2,864,841 + Shew_2436 0.76 -0.6 2,864,859 + Shew_2436 0.78 +0.2 2,865,125 + -0.8 2,865,125 + -0.7 2,865,247 - -0.3 2,865,381 - Shew_2437 0.32 -0.4 2,865,642 - +0.3 2,866,051 - Shew_2438 0.47 -0.2
Or see this region's nucleotide sequence