Strain Fitness in Shewanella loihica PV-4 around Shew_2263

Experiment: syringaldehyde 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2261 and Shew_2262 are separated by 23 nucleotidesShew_2262 and Shew_2263 are separated by 75 nucleotidesShew_2263 and Shew_2264 are separated by 71 nucleotidesShew_2264 and Shew_2265 are separated by 234 nucleotides Shew_2261: Shew_2261 - YciI-like protein (RefSeq), at 2,640,707 to 2,641,006 _2261 Shew_2262: Shew_2262 - exonuclease III (RefSeq), at 2,641,030 to 2,641,839 _2262 Shew_2263: Shew_2263 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,641,915 to 2,643,363 _2263 Shew_2264: Shew_2264 - hypothetical protein (RefSeq), at 2,643,435 to 2,643,929 _2264 Shew_2265: Shew_2265 - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (RefSeq), at 2,644,164 to 2,646,407 _2265 Position (kb) 2641 2642 2643 2644Strain fitness (log2 ratio) -1 0 1at 2640.922 kb on + strand, within Shew_2261at 2640.946 kb on - strand, within Shew_2261at 2641.785 kb on - strandat 2642.183 kb on + strand, within Shew_2263at 2642.343 kb on - strand, within Shew_2263at 2643.292 kb on - strandat 2643.356 kb on + strandat 2643.628 kb on - strand, within Shew_2264at 2643.736 kb on - strand, within Shew_2264

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
remove
2,640,922 + Shew_2261 0.72 -0.1
2,640,946 - Shew_2261 0.80 -0.6
2,641,785 - -0.3
2,642,183 + Shew_2263 0.18 -0.0
2,642,343 - Shew_2263 0.30 -0.8
2,643,292 - +0.0
2,643,356 + +0.3
2,643,628 - Shew_2264 0.39 -0.5
2,643,736 - Shew_2264 0.61 -0.2

Or see this region's nucleotide sequence