Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2261 and Shew_2262 are separated by 23 nucleotides Shew_2262 and Shew_2263 are separated by 75 nucleotides Shew_2263 and Shew_2264 are separated by 71 nucleotides Shew_2264 and Shew_2265 are separated by 234 nucleotides
Shew_2261: Shew_2261 - YciI-like protein (RefSeq), at 2,640,707 to 2,641,006
_2261
Shew_2262: Shew_2262 - exonuclease III (RefSeq), at 2,641,030 to 2,641,839
_2262
Shew_2263: Shew_2263 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,641,915 to 2,643,363
_2263
Shew_2264: Shew_2264 - hypothetical protein (RefSeq), at 2,643,435 to 2,643,929
_2264
Shew_2265: Shew_2265 - aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (RefSeq), at 2,644,164 to 2,646,407
_2265
Position (kb)
2641
2642
2643
2644 Strain fitness (log2 ratio)
-1
0
1 at 2640.922 kb on + strand, within Shew_2261 at 2640.946 kb on - strand, within Shew_2261 at 2641.785 kb on - strand at 2642.183 kb on + strand, within Shew_2263 at 2642.343 kb on - strand, within Shew_2263 at 2643.292 kb on - strand at 2643.356 kb on + strand at 2643.628 kb on - strand, within Shew_2264 at 2643.736 kb on - strand, within Shew_2264
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 2,640,922 + Shew_2261 0.72 -0.1 2,640,946 - Shew_2261 0.80 -0.6 2,641,785 - -0.3 2,642,183 + Shew_2263 0.18 -0.0 2,642,343 - Shew_2263 0.30 -0.8 2,643,292 - +0.0 2,643,356 + +0.3 2,643,628 - Shew_2264 0.39 -0.5 2,643,736 - Shew_2264 0.61 -0.2
Or see this region's nucleotide sequence