Strain Fitness in Shewanella loihica PV-4 around Shew_1548

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1547 and Shew_1548 are separated by 177 nucleotidesShew_1548 and Shew_1549 are separated by 126 nucleotides Shew_1547: Shew_1547 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 1,775,223 to 1,776,284 _1547 Shew_1548: Shew_1548 - hypothetical protein (RefSeq), at 1,776,462 to 1,777,274 _1548 Shew_1549: Shew_1549 - phosphoenolpyruvate synthase (RefSeq), at 1,777,401 to 1,779,770 _1549 Position (kb) 1776 1777 1778Strain fitness (log2 ratio) -1 0 1at 1775.824 kb on + strand, within Shew_1547at 1776.150 kb on + strand, within Shew_1547at 1776.256 kb on - strandat 1776.309 kb on + strandat 1776.361 kb on - strandat 1776.396 kb on - strandat 1776.673 kb on - strand, within Shew_1548at 1776.727 kb on - strand, within Shew_1548at 1776.820 kb on + strand, within Shew_1548at 1776.939 kb on - strand, within Shew_1548

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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1,775,824 + Shew_1547 0.57 +0.3
1,776,150 + Shew_1547 0.87 -0.8
1,776,256 - +0.1
1,776,309 + -0.3
1,776,361 - -0.6
1,776,396 - +0.6
1,776,673 - Shew_1548 0.26 -0.3
1,776,727 - Shew_1548 0.33 -0.4
1,776,820 + Shew_1548 0.44 -0.4
1,776,939 - Shew_1548 0.59 -0.7

Or see this region's nucleotide sequence