Strain Fitness in Shewanella loihica PV-4 around Shew_1216

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecA and Shew_1216 are separated by 79 nucleotidesShew_1216 and Shew_1217 are separated by 244 nucleotides Shew_1215: recA - recombinase A (RefSeq), at 1,410,941 to 1,412,002 recA Shew_1216: Shew_1216 - regulatory protein RecX (RefSeq), at 1,412,082 to 1,412,534 _1216 Shew_1217: Shew_1217 - alanyl-tRNA synthetase (RefSeq), at 1,412,779 to 1,415,403 _1217 Position (kb) 1412 1413Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1411.185 kb on + strand, within recAat 1411.495 kb on + strand, within recAat 1411.549 kb on - strand, within recAat 1411.575 kb on + strand, within recAat 1412.153 kb on + strand, within Shew_1216at 1412.291 kb on + strand, within Shew_1216at 1412.294 kb on - strand, within Shew_1216at 1412.304 kb on - strand, within Shew_1216at 1412.455 kb on - strand, within Shew_1216

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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1,411,185 + recA Shew_1215 0.23 -3.2
1,411,495 + recA Shew_1215 0.52 -4.5
1,411,549 - recA Shew_1215 0.57 -2.2
1,411,575 + recA Shew_1215 0.60 -2.9
1,412,153 + Shew_1216 0.16 +0.3
1,412,291 + Shew_1216 0.46 +0.1
1,412,294 - Shew_1216 0.47 +0.4
1,412,304 - Shew_1216 0.49 -0.5
1,412,455 - Shew_1216 0.82 +0.1

Or see this region's nucleotide sequence