Strain Fitness in Shewanella loihica PV-4 around Shew_1162

Experiment: syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1161 and Shew_1162 are separated by 312 nucleotidesShew_1162 and Shew_1163 are separated by 466 nucleotides Shew_1161: Shew_1161 - NADH dehydrogenase (RefSeq), at 1,334,285 to 1,335,586 _1161 Shew_1162: Shew_1162 - hypothetical protein (RefSeq), at 1,335,899 to 1,336,273 _1162 Shew_1163: Shew_1163 - RND family efflux transporter MFP subunit (RefSeq), at 1,336,740 to 1,337,897 _1163 Position (kb) 1335 1336 1337Strain fitness (log2 ratio) -1 0 1at 1335.445 kb on - strand, within Shew_1161at 1335.952 kb on - strand, within Shew_1162at 1335.970 kb on - strand, within Shew_1162at 1336.391 kb on - strandat 1336.419 kb on + strandat 1337.075 kb on + strand, within Shew_1163

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 1 mM
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1,335,445 - Shew_1161 0.89 +0.1
1,335,952 - Shew_1162 0.14 -0.0
1,335,970 - Shew_1162 0.19 -0.8
1,336,391 - +0.7
1,336,419 + -0.0
1,337,075 + Shew_1163 0.29 +0.7

Or see this region's nucleotide sequence