Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0757 and Shew_0758 are separated by 188 nucleotides Shew_0758 and Shew_0759 are separated by 11 nucleotides Shew_0759 and Shew_0760 are separated by 458 nucleotides
Shew_0757: Shew_0757 - putative transcriptional regulator, CadC (RefSeq), at 859,122 to 859,577
_0757
Shew_0758: Shew_0758 - hypothetical protein (RefSeq), at 859,766 to 860,287
_0758
Shew_0759: Shew_0759 - cytochrome c, putative (RefSeq), at 860,299 to 861,120
_0759
Shew_0760: Shew_0760 - response regulator receiver protein (RefSeq), at 861,579 to 862,400
_0760
Position (kb) 860
861
862 Strain fitness (log2 ratio) -1
0
1 at 859.396 kb on - strand, within Shew_0757 at 859.474 kb on - strand, within Shew_0757 at 859.686 kb on - strand at 859.879 kb on - strand, within Shew_0758 at 859.879 kb on - strand, within Shew_0758 at 859.903 kb on - strand, within Shew_0758 at 860.139 kb on - strand, within Shew_0758 at 860.161 kb on + strand, within Shew_0758 at 860.460 kb on - strand, within Shew_0759 at 860.470 kb on - strand, within Shew_0759 at 860.705 kb on + strand, within Shew_0759 at 861.054 kb on - strand at 861.545 kb on + strand at 862.000 kb on + strand, within Shew_0760 at 862.008 kb on - strand, within Shew_0760 at 862.108 kb on + strand, within Shew_0760
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 859,396 - Shew_0757 0.60 +0.5 859,474 - Shew_0757 0.77 -0.4 859,686 - -0.3 859,879 - Shew_0758 0.22 +0.1 859,879 - Shew_0758 0.22 -0.2 859,903 - Shew_0758 0.26 -0.0 860,139 - Shew_0758 0.71 -0.1 860,161 + Shew_0758 0.76 +0.2 860,460 - Shew_0759 0.20 -0.2 860,470 - Shew_0759 0.21 -0.5 860,705 + Shew_0759 0.49 -0.5 861,054 - -0.1 861,545 + -0.3 862,000 + Shew_0760 0.51 -0.0 862,008 - Shew_0760 0.52 +0.2 862,108 + Shew_0760 0.64 -0.1
Or see this region's nucleotide sequence