Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0671 and Shew_0672 are separated by 232 nucleotides Shew_0672 and Shew_0673 are separated by 8 nucleotides Shew_0673 and Shew_0674 are separated by 98 nucleotides
Shew_0671: Shew_0671 - phospholipase A(1) (RefSeq), at 764,130 to 765,056
_0671
Shew_0672: Shew_0672 - uroporphyrin-III C-methyltransferase (RefSeq), at 765,289 to 766,110
_0672
Shew_0673: Shew_0673 - hypothetical protein (RefSeq), at 766,119 to 766,955
_0673
Shew_0674: Shew_0674 - major facilitator transporter (RefSeq), at 767,054 to 768,220
_0674
Position (kb) 765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 764.470 kb on - strand, within Shew_0671 at 764.536 kb on + strand, within Shew_0671 at 764.667 kb on + strand, within Shew_0671 at 764.758 kb on - strand, within Shew_0671 at 764.908 kb on - strand, within Shew_0671 at 764.952 kb on - strand, within Shew_0671 at 765.464 kb on + strand, within Shew_0672 at 765.504 kb on - strand, within Shew_0672 at 765.581 kb on - strand, within Shew_0672 at 765.960 kb on + strand, within Shew_0672 at 766.160 kb on - strand at 766.292 kb on + strand, within Shew_0673 at 766.365 kb on + strand, within Shew_0673 at 766.526 kb on - strand, within Shew_0673 at 766.618 kb on + strand, within Shew_0673 at 766.724 kb on - strand, within Shew_0673 at 766.935 kb on - strand at 767.040 kb on - strand at 767.046 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 764,470 - Shew_0671 0.37 -0.3 764,536 + Shew_0671 0.44 +0.2 764,667 + Shew_0671 0.58 -0.0 764,758 - Shew_0671 0.68 +0.3 764,908 - Shew_0671 0.84 +0.2 764,952 - Shew_0671 0.89 -0.0 765,464 + Shew_0672 0.21 -0.6 765,504 - Shew_0672 0.26 -3.3 765,581 - Shew_0672 0.36 -1.8 765,960 + Shew_0672 0.82 -0.8 766,160 - -0.1 766,292 + Shew_0673 0.21 -0.0 766,365 + Shew_0673 0.29 +0.2 766,526 - Shew_0673 0.49 -0.2 766,618 + Shew_0673 0.60 -0.3 766,724 - Shew_0673 0.72 +0.4 766,935 - -0.3 767,040 - +0.2 767,046 + +0.4
Or see this region's nucleotide sequence