Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0591 and Shew_0592 are separated by 56 nucleotides Shew_0592 and Shew_0593 are separated by 67 nucleotides Shew_0593 and Shew_0594 are separated by 174 nucleotides Shew_0594 and Shew_0595 are separated by 65 nucleotides Shew_0595 and Shew_0596 are separated by 100 nucleotides
Shew_0591: Shew_0591 - glucose-methanol-choline oxidoreductase (RefSeq), at 667,823 to 669,412
_0591
Shew_0592: Shew_0592 - hypothetical protein (RefSeq), at 669,469 to 669,918
_0592
Shew_0593: Shew_0593 - ABC transporter-related protein (RefSeq), at 669,986 to 671,896
_0593
Shew_0594: Shew_0594 - hypothetical protein (RefSeq), at 672,071 to 672,271
_0594
Shew_0595: Shew_0595 - hypothetical protein (RefSeq), at 672,337 to 672,648
_0595
Shew_0596: Shew_0596 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 672,749 to 674,671
_0596
Position (kb) 669
670
671
672 Strain fitness (log2 ratio) -1
0
1
2 at 669.071 kb on + strand, within Shew_0591 at 669.247 kb on - strand, within Shew_0591 at 669.341 kb on - strand at 669.525 kb on + strand, within Shew_0592 at 669.596 kb on - strand, within Shew_0592 at 669.658 kb on - strand, within Shew_0592 at 669.933 kb on - strand at 669.953 kb on + strand at 669.966 kb on - strand at 670.058 kb on - strand at 670.069 kb on + strand at 670.092 kb on + strand at 670.125 kb on + strand at 670.554 kb on - strand, within Shew_0593 at 670.700 kb on + strand, within Shew_0593 at 670.806 kb on + strand, within Shew_0593 at 670.814 kb on - strand, within Shew_0593 at 670.814 kb on - strand, within Shew_0593 at 671.040 kb on - strand, within Shew_0593 at 671.169 kb on + strand, within Shew_0593 at 671.181 kb on + strand, within Shew_0593 at 671.595 kb on + strand, within Shew_0593 at 671.603 kb on - strand, within Shew_0593 at 671.603 kb on - strand, within Shew_0593 at 671.730 kb on + strand at 671.739 kb on + strand at 671.954 kb on + strand at 672.136 kb on + strand, within Shew_0594 at 672.136 kb on + strand, within Shew_0594 at 672.219 kb on - strand, within Shew_0594 at 672.267 kb on - strand at 672.516 kb on + strand, within Shew_0595
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 669,071 + Shew_0591 0.78 +0.2 669,247 - Shew_0591 0.90 -0.0 669,341 - +0.7 669,525 + Shew_0592 0.12 +0.4 669,596 - Shew_0592 0.28 +0.8 669,658 - Shew_0592 0.42 +0.3 669,933 - +0.8 669,953 + -0.1 669,966 - -0.2 670,058 - +0.2 670,069 + -0.6 670,092 + +0.6 670,125 + +1.8 670,554 - Shew_0593 0.30 -0.8 670,700 + Shew_0593 0.37 -0.9 670,806 + Shew_0593 0.43 -0.5 670,814 - Shew_0593 0.43 -0.8 670,814 - Shew_0593 0.43 -0.9 671,040 - Shew_0593 0.55 -0.7 671,169 + Shew_0593 0.62 -1.0 671,181 + Shew_0593 0.63 -0.7 671,595 + Shew_0593 0.84 -0.2 671,603 - Shew_0593 0.85 -0.7 671,603 - Shew_0593 0.85 -1.7 671,730 + -0.3 671,739 + -0.6 671,954 + -0.5 672,136 + Shew_0594 0.32 -0.0 672,136 + Shew_0594 0.32 +0.0 672,219 - Shew_0594 0.74 +0.5 672,267 - +0.1 672,516 + Shew_0595 0.57 +0.9
Or see this region's nucleotide sequence