Experiment: syringaldehyde 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0362 and Shew_0363 are separated by 117 nucleotides Shew_0363 and Shew_0364 are separated by 11 nucleotides Shew_0364 and Shew_R0018 are separated by 189 nucleotides Shew_R0018 and Shew_0365 are separated by 499 nucleotides
Shew_0362: Shew_0362 - signal peptidase I (RefSeq), at 410,865 to 411,581
_0362
Shew_0363: Shew_0363 - nucleotidase (RefSeq), at 411,699 to 412,376
_0363
Shew_0364: Shew_0364 - MshA, mannose-sensitive haemaglutinin (RefSeq), at 412,388 to 412,879
_0364
Shew_R0018: Shew_R0018 - tRNA-Ser (RefSeq), at 413,069 to 413,159
_R0018
Shew_0365: Shew_0365 - hypothetical protein (RefSeq), at 413,659 to 414,147
_0365
Position (kb) 412
413 Strain fitness (log2 ratio) -1
0
1 at 411.424 kb on - strand, within Shew_0362 at 411.654 kb on + strand at 411.678 kb on + strand at 411.680 kb on - strand at 412.255 kb on - strand, within Shew_0363 at 412.434 kb on - strand at 412.434 kb on - strand at 412.441 kb on - strand, within Shew_0364 at 412.609 kb on - strand, within Shew_0364 at 413.464 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 1 mM remove 411,424 - Shew_0362 0.78 +0.0 411,654 + +0.0 411,678 + +0.2 411,680 - -0.0 412,255 - Shew_0363 0.82 +0.1 412,434 - +0.2 412,434 - -0.1 412,441 - Shew_0364 0.11 -0.9 412,609 - Shew_0364 0.45 -0.6 413,464 - +0.6
Or see this region's nucleotide sequence