Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0080

Experiment: MoLS4 with L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysC and DVUA0080 are separated by 97 nucleotidesDVUA0080 and DVUA0081 overlap by 1 nucleotides DVUA0079: cysC - adenylylsulfate kinase (TIGR), at 105,582 to 106,268 cysC DVUA0080: DVUA0080 - glycosyl transferase, group 2 family protein (TIGR), at 106,366 to 107,247 DVUA0080 DVUA0081: DVUA0081 - glycosyl transferase, group 1/2 family protein (TIGR), at 107,247 to 109,361 DVUA0081 Position (kb) 106 107 108Strain fitness (log2 ratio) -2 -1 0 1at 105.370 kb on + strandat 105.399 kb on + strandat 105.429 kb on + strandat 105.686 kb on - strand, within cysCat 105.958 kb on + strand, within cysCat 105.974 kb on - strand, within cysCat 105.976 kb on + strand, within cysCat 106.076 kb on - strand, within cysCat 106.173 kb on + strand, within cysCat 106.202 kb on + strandat 106.202 kb on + strandat 106.367 kb on + strandat 106.439 kb on + strandat 106.575 kb on + strand, within DVUA0080at 106.593 kb on - strand, within DVUA0080at 106.620 kb on - strand, within DVUA0080at 106.622 kb on + strand, within DVUA0080at 107.110 kb on + strand, within DVUA0080at 107.334 kb on + strandat 107.342 kb on - strandat 107.362 kb on + strandat 107.448 kb on - strandat 107.736 kb on + strand, within DVUA0081at 107.851 kb on + strand, within DVUA0081at 108.049 kb on + strand, within DVUA0081

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan (N)
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105,370 + -0.9
105,399 + +0.2
105,429 + -0.0
105,686 - cysC DVUA0079 0.15 +0.4
105,958 + cysC DVUA0079 0.55 -0.4
105,974 - cysC DVUA0079 0.57 -0.4
105,976 + cysC DVUA0079 0.57 -0.8
106,076 - cysC DVUA0079 0.72 -0.8
106,173 + cysC DVUA0079 0.86 +0.3
106,202 + -0.2
106,202 + +0.3
106,367 + -0.9
106,439 + -0.5
106,575 + DVUA0080 0.24 -1.9
106,593 - DVUA0080 0.26 +0.1
106,620 - DVUA0080 0.29 -1.7
106,622 + DVUA0080 0.29 -1.1
107,110 + DVUA0080 0.84 -0.0
107,334 + -1.2
107,342 - -1.8
107,362 + -0.6
107,448 - -2.4
107,736 + DVUA0081 0.23 -1.3
107,851 + DVUA0081 0.29 -0.7
108,049 + DVUA0081 0.38 -0.2

Or see this region's nucleotide sequence