Experiment: Heparin from porcine intestinal mucosa (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4565 and tRNA-Thr are separated by 491 nucleotides tRNA-Thr and BT4566 are separated by 68 nucleotides BT4566 and BT4567 are separated by 1 nucleotides
BT4565: BT4565 - hypothetical protein (NCBI ptt file), at 5,985,535 to 5,985,909
BT4565
BT_t69: tRNA-Thr - tRNA-Thr (RefSeq), at 5,986,401 to 5,986,474
tRNA-Thr
BT4566: BT4566 - two-component system response regulator protein (NCBI ptt file), at 5,986,543 to 5,987,247
BT4566
BT4567: BT4567 - putative two-component system sensor but no kinase domain (NCBI ptt file), at 5,987,249 to 5,988,289
BT4567
Position (kb) 5986
5987
5988 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5985.962 kb on - strand at 5986.056 kb on - strand at 5986.142 kb on - strand at 5986.225 kb on - strand at 5986.522 kb on + strand at 5986.523 kb on - strand at 5986.587 kb on + strand at 5986.683 kb on - strand, within BT4566 at 5986.744 kb on - strand, within BT4566 at 5986.748 kb on + strand, within BT4566 at 5986.748 kb on + strand, within BT4566 at 5986.749 kb on - strand, within BT4566 at 5986.754 kb on - strand, within BT4566 at 5986.754 kb on - strand, within BT4566 at 5986.942 kb on + strand, within BT4566 at 5986.952 kb on - strand, within BT4566 at 5986.958 kb on + strand, within BT4566 at 5986.966 kb on + strand, within BT4566 at 5987.004 kb on - strand, within BT4566 at 5987.004 kb on - strand, within BT4566 at 5987.044 kb on - strand, within BT4566 at 5987.057 kb on - strand, within BT4566 at 5987.101 kb on + strand, within BT4566 at 5987.124 kb on + strand, within BT4566 at 5987.125 kb on - strand, within BT4566 at 5987.226 kb on + strand at 5987.233 kb on - strand at 5987.284 kb on + strand at 5987.285 kb on - strand at 5987.484 kb on + strand, within BT4567 at 5987.572 kb on + strand, within BT4567 at 5987.610 kb on + strand, within BT4567 at 5987.611 kb on - strand, within BT4567 at 5987.611 kb on - strand, within BT4567 at 5987.657 kb on + strand, within BT4567 at 5987.750 kb on - strand, within BT4567 at 5987.892 kb on - strand, within BT4567 at 5987.892 kb on - strand, within BT4567 at 5987.896 kb on - strand, within BT4567 at 5987.900 kb on + strand, within BT4567 at 5987.901 kb on - strand, within BT4567 at 5987.983 kb on + strand, within BT4567 at 5987.984 kb on - strand, within BT4567 at 5987.992 kb on + strand, within BT4567 at 5987.992 kb on + strand, within BT4567 at 5988.036 kb on - strand, within BT4567 at 5988.036 kb on - strand, within BT4567 at 5988.116 kb on + strand, within BT4567 at 5988.117 kb on - strand, within BT4567 at 5988.216 kb on - strand at 5988.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heparin from porcine intestinal mucosa (C) remove 5,985,962 - -0.3 5,986,056 - -2.7 5,986,142 - -1.7 5,986,225 - -0.1 5,986,522 + -0.9 5,986,523 - -0.2 5,986,587 + -0.9 5,986,683 - BT4566 0.20 -2.6 5,986,744 - BT4566 0.29 -3.7 5,986,748 + BT4566 0.29 -2.3 5,986,748 + BT4566 0.29 -0.9 5,986,749 - BT4566 0.29 +1.8 5,986,754 - BT4566 0.30 -1.3 5,986,754 - BT4566 0.30 -0.6 5,986,942 + BT4566 0.57 +0.4 5,986,952 - BT4566 0.58 -5.0 5,986,958 + BT4566 0.59 -2.3 5,986,966 + BT4566 0.60 -1.6 5,987,004 - BT4566 0.65 -1.9 5,987,004 - BT4566 0.65 -0.0 5,987,044 - BT4566 0.71 -2.5 5,987,057 - BT4566 0.73 -1.2 5,987,101 + BT4566 0.79 -2.9 5,987,124 + BT4566 0.82 -3.0 5,987,125 - BT4566 0.83 -3.3 5,987,226 + -2.1 5,987,233 - +0.9 5,987,284 + -1.9 5,987,285 - -2.9 5,987,484 + BT4567 0.23 +0.3 5,987,572 + BT4567 0.31 +0.0 5,987,610 + BT4567 0.35 +0.8 5,987,611 - BT4567 0.35 -0.3 5,987,611 - BT4567 0.35 -2.1 5,987,657 + BT4567 0.39 -2.9 5,987,750 - BT4567 0.48 +0.0 5,987,892 - BT4567 0.62 +1.5 5,987,892 - BT4567 0.62 +0.8 5,987,896 - BT4567 0.62 +1.2 5,987,900 + BT4567 0.63 +1.8 5,987,901 - BT4567 0.63 -2.5 5,987,983 + BT4567 0.71 -2.3 5,987,984 - BT4567 0.71 -0.4 5,987,992 + BT4567 0.71 -1.3 5,987,992 + BT4567 0.71 -2.6 5,988,036 - BT4567 0.76 +0.3 5,988,036 - BT4567 0.76 +0.7 5,988,116 + BT4567 0.83 +0.6 5,988,117 - BT4567 0.83 +0.5 5,988,216 - +0.8 5,988,221 - -0.5
Or see this region's nucleotide sequence