Experiment: Heparin from porcine intestinal mucosa (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT3941 and BT3942 are separated by 189 nucleotides BT3942 and BT3943 are separated by 78 nucleotides BT3943 and BT3944 are separated by 0 nucleotides
BT3941: BT3941 - conserved hypothetical protein (NCBI ptt file), at 5,116,942 to 5,117,868
BT3941
BT3942: BT3942 - conserved hypothetical protein (NCBI ptt file), at 5,118,058 to 5,118,495
BT3942
BT3943: BT3943 - conserved hypothetical protein, putative translation factor (NCBI ptt file), at 5,118,574 to 5,119,137
BT3943
BT3944: BT3944 - putative chloride channel protein (NCBI ptt file), at 5,119,138 to 5,120,934
BT3944
Position (kb) 5118
5119 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5117.066 kb on + strand, within BT3941 at 5117.103 kb on - strand, within BT3941 at 5117.103 kb on - strand, within BT3941 at 5117.148 kb on - strand, within BT3941 at 5117.196 kb on + strand, within BT3941 at 5117.199 kb on + strand, within BT3941 at 5117.200 kb on - strand, within BT3941 at 5117.200 kb on - strand, within BT3941 at 5117.201 kb on + strand, within BT3941 at 5117.202 kb on - strand, within BT3941 at 5117.202 kb on - strand, within BT3941 at 5117.211 kb on - strand, within BT3941 at 5117.325 kb on + strand, within BT3941 at 5117.501 kb on - strand, within BT3941 at 5117.545 kb on + strand, within BT3941 at 5117.545 kb on + strand, within BT3941 at 5117.546 kb on - strand, within BT3941 at 5117.575 kb on - strand, within BT3941 at 5117.601 kb on + strand, within BT3941 at 5117.638 kb on - strand, within BT3941 at 5117.818 kb on + strand at 5117.818 kb on + strand at 5117.819 kb on - strand at 5117.858 kb on - strand at 5117.914 kb on + strand at 5117.921 kb on + strand at 5117.928 kb on + strand at 5117.945 kb on + strand at 5117.945 kb on + strand at 5117.950 kb on + strand at 5117.951 kb on - strand at 5117.952 kb on + strand at 5117.971 kb on + strand at 5118.077 kb on - strand at 5118.077 kb on - strand at 5118.077 kb on - strand at 5118.273 kb on + strand, within BT3942 at 5118.273 kb on + strand, within BT3942 at 5118.328 kb on + strand, within BT3942 at 5118.362 kb on - strand, within BT3942 at 5118.463 kb on - strand at 5118.532 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heparin from porcine intestinal mucosa (C) remove 5,117,066 + BT3941 0.13 +0.8 5,117,103 - BT3941 0.17 -0.4 5,117,103 - BT3941 0.17 -2.1 5,117,148 - BT3941 0.22 -0.2 5,117,196 + BT3941 0.27 +0.4 5,117,199 + BT3941 0.28 +1.1 5,117,200 - BT3941 0.28 -2.0 5,117,200 - BT3941 0.28 +0.1 5,117,201 + BT3941 0.28 +0.3 5,117,202 - BT3941 0.28 -2.8 5,117,202 - BT3941 0.28 +1.2 5,117,211 - BT3941 0.29 +0.5 5,117,325 + BT3941 0.41 +0.4 5,117,501 - BT3941 0.60 +0.1 5,117,545 + BT3941 0.65 -2.0 5,117,545 + BT3941 0.65 -1.8 5,117,546 - BT3941 0.65 -1.2 5,117,575 - BT3941 0.68 +1.9 5,117,601 + BT3941 0.71 -2.0 5,117,638 - BT3941 0.75 +0.4 5,117,818 + -4.0 5,117,818 + -3.6 5,117,819 - -3.8 5,117,858 - +1.0 5,117,914 + +0.4 5,117,921 + -3.4 5,117,928 + -1.5 5,117,945 + -1.5 5,117,945 + -0.2 5,117,950 + +2.2 5,117,951 - -1.3 5,117,952 + -0.8 5,117,971 + -0.7 5,118,077 - -3.0 5,118,077 - -2.2 5,118,077 - -1.1 5,118,273 + BT3942 0.49 -3.1 5,118,273 + BT3942 0.49 -0.8 5,118,328 + BT3942 0.62 -0.2 5,118,362 - BT3942 0.69 -2.0 5,118,463 - -1.1 5,118,532 + -2.8
Or see this region's nucleotide sequence