Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3160

Experiment: Heparin from porcine intestinal mucosa (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Heparin from porcine intestinal mucosa (C)
4,027,702	-		BT3159	0.34	-0.2
4,027,704	+		BT3159	0.34	+0.0
4,027,704	+		BT3159	0.34	+0.7
4,027,757	+		BT3159	0.38	-2.4
4,027,758	-		BT3159	0.38	+0.3
4,027,784	+		BT3159	0.40	-3.2
4,027,785	-		BT3159	0.40	-1.1
4,027,802	+		BT3159	0.42	-0.3
4,027,805	+		BT3159	0.42	+0.9
4,027,805	+		BT3159	0.42	+1.8
4,027,823	-		BT3159	0.43	-0.3
4,027,823	-		BT3159	0.43	+0.8
4,027,823	-		BT3159	0.43	-1.3
4,027,875	+		BT3159	0.47	+0.5
4,027,876	-		BT3159	0.47	-1.8
4,027,896	+		BT3159	0.49	-1.3
4,027,897	-		BT3159	0.49	+0.5
4,027,918	+		BT3159	0.51	-2.8
4,027,923	+		BT3159	0.51	-3.1
4,027,923	+		BT3159	0.51	-2.0
4,027,923	+		BT3159	0.51	-0.8
4,027,926	+		BT3159	0.51	+1.0
4,027,926	+		BT3159	0.51	-3.3
4,027,926	+		BT3159	0.51	+0.3
4,027,927	-		BT3159	0.51	+0.6
4,027,928	+		BT3159	0.51	-1.0
4,027,928	+		BT3159	0.51	-0.7
4,027,928	+		BT3159	0.51	+0.0
4,027,928	+		BT3159	0.51	+0.7
4,027,928	+		BT3159	0.51	-1.8
4,027,929	-		BT3159	0.51	+1.0
4,027,930	+		BT3159	0.52	-2.7
4,027,963	+		BT3159	0.54	-1.6
4,027,975	-		BT3159	0.55	-1.3
4,028,024	+		BT3159	0.59	-1.0
4,028,036	-		BT3159	0.60	+0.5
4,028,036	-		BT3159	0.60	-0.9
4,028,040	+		BT3159	0.60	-3.4
4,028,075	+		BT3159	0.63	+1.0
4,028,075	+		BT3159	0.63	-2.2
4,028,076	-		BT3159	0.63	-0.1
4,028,165	-		BT3159	0.70	-2.0
4,028,244	+		BT3159	0.76	-1.1
4,028,245	-		BT3159	0.76	-1.4
4,028,249	+		BT3159	0.76	+1.2
4,028,263	+		BT3159	0.77	+1.6
4,028,298	+		BT3159	0.80	-2.9
4,028,320	-		BT3159	0.82	-0.8
4,028,333	+		BT3159	0.83	+0.0
4,028,396	-		BT3159	0.88	+1.2
4,028,419	-		BT3159	0.89	-4.7
4,028,419	-		BT3159	0.89	-2.5
4,028,422	-		BT3159	0.90	-2.0
4,028,424	+		BT3159	0.90	-1.9
4,028,439	-				-2.2
4,028,444	+				-2.0
4,028,454	-				-0.7
4,028,473	-				-0.7
4,028,486	+				-2.4
4,028,490	-				-1.1
4,028,490	-				-0.9
4,028,490	-				-2.0
4,028,509	-				+0.5
4,028,517	-				-4.0
4,028,524	-				-0.3
4,028,532	-				+1.0
4,028,546	+				-0.4
4,028,570	-				+0.6
4,028,578	-				-0.1
4,028,578	-				-0.7
4,028,592	-				+1.1
4,028,625	+				-0.2
4,028,643	-				+1.0
4,028,646	-				-1.6
4,028,646	-				-1.8
4,028,661	-				-1.0
4,028,668	-				-2.2
4,028,672	-				-2.2
4,028,706	+				-0.6
4,028,710	+				+0.8
4,028,710	+				-0.7
4,028,787	+				+0.3
4,028,810	+				+0.0
4,028,810	+				-2.0
4,028,821	-				+1.0
4,028,821	-				-1.3
4,028,828	-				-1.3
4,028,933	+		BT3160	0.14	+0.1
4,028,933	+		BT3160	0.14	+0.5
4,028,934	-		BT3160	0.14	+0.7
4,028,934	-		BT3160	0.14	-3.3
4,028,940	+		BT3160	0.14	+0.3
4,028,941	-		BT3160	0.14	+0.4
4,028,958	+		BT3160	0.15	-0.8
4,028,958	+		BT3160	0.15	+1.4
4,028,959	-		BT3160	0.15	+0.5
4,028,961	+		BT3160	0.15	+0.1
4,029,001	-		BT3160	0.18	+0.0
4,029,013	+		BT3160	0.18	-2.9
4,029,058	+		BT3160	0.21	-1.6
4,029,059	-		BT3160	0.21	+1.5
4,029,080	+		BT3160	0.22	+0.2
4,029,080	+		BT3160	0.22	+1.6
4,029,087	+		BT3160	0.23	-1.9
4,029,088	-		BT3160	0.23	+1.6
4,029,097	+		BT3160	0.23	-1.4
4,029,098	-		BT3160	0.23	-2.7
4,029,123	+		BT3160	0.25	+1.9
4,029,123	+		BT3160	0.25	-0.6
4,029,124	-		BT3160	0.25	+0.6
4,029,293	-		BT3160	0.35	-1.6
4,029,298	-		BT3160	0.35	-0.6
4,029,307	+		BT3160	0.36	+1.1
4,029,341	-		BT3160	0.37	-3.6
4,029,341	-		BT3160	0.37	-1.9
4,029,444	+		BT3160	0.44	+0.6
4,029,451	+		BT3160	0.44	+0.7
4,029,452	-		BT3160	0.44	-1.6
4,029,453	+		BT3160	0.44	-0.1
4,029,457	+		BT3160	0.44	-0.7
4,029,458	-		BT3160	0.44	-0.6
4,029,458	-		BT3160	0.44	-2.8
4,029,459	+		BT3160	0.44	+0.3
4,029,460	-		BT3160	0.44	+1.8
4,029,460	-		BT3160	0.44	-1.3
4,029,460	-		BT3160	0.44	-0.6
4,029,479	-		BT3160	0.46	-1.1
4,029,499	-		BT3160	0.47	+0.3
4,029,531	+				+1.0
4,029,553	-		BT3160	0.50	+1.8
4,029,556	-		BT3160	0.50	+0.4
4,029,585	+		BT3160	0.52	-1.4
4,029,586	-		BT3160	0.52	-2.9
4,029,601	-		BT3160	0.53	-2.9
4,029,601	-		BT3160	0.53	-2.2
4,029,614	+		BT3160	0.53	+0.7
4,029,644	+		BT3160	0.55	-0.6
4,029,644	+		BT3160	0.55	-1.7
4,029,645	-		BT3160	0.55	-1.4
4,029,658	-		BT3160	0.56	+0.0
4,029,671	-		BT3160	0.57	+1.6
4,029,739	-		BT3160	0.61	+2.2
4,029,739	-		BT3160	0.61	-2.8
4,029,742	+		BT3160	0.61	+0.3
4,029,743	-		BT3160	0.61	-2.5
4,029,743	-		BT3160	0.61	+0.2
4,029,748	+		BT3160	0.61	-1.8
4,029,748	+		BT3160	0.61	+1.8
4,029,765	+		BT3160	0.62	+2.3
4,029,776	+		BT3160	0.63	-3.1
4,029,777	-		BT3160	0.63	-0.8
4,029,778	+		BT3160	0.63	-0.6
4,029,779	-		BT3160	0.63	-0.6
4,029,779	-		BT3160	0.63	-2.1
4,029,800	-		BT3160	0.64	+0.8
4,029,855	+		BT3160	0.68	-1.6
4,029,855	+		BT3160	0.68	-1.5
4,029,855	+		BT3160	0.68	+1.2
4,029,885	+		BT3160	0.69	+0.7
4,029,906	-		BT3160	0.71	+0.7
4,029,906	-		BT3160	0.71	+0.8
4,029,953	-		BT3160	0.73	+0.5
4,030,017	+		BT3160	0.77	-3.8
4,030,018	-		BT3160	0.77	-2.7
4,030,018	-		BT3160	0.77	+0.7
4,030,126	-		BT3160	0.83	+0.0
4,030,138	-		BT3160	0.84	+0.0
4,030,140	+		BT3160	0.84	-3.0
4,030,145	+		BT3160	0.85	+0.4
4,030,162	-		BT3160	0.86	+2.1
4,030,195	-		BT3160	0.88	-0.6
4,030,206	-		BT3160	0.88	-0.3
4,030,208	+		BT3160	0.88	-1.2
4,030,210	+		BT3160	0.88	-0.4
4,030,238	-				-2.9
4,030,269	+				+0.8
4,030,310	-				-0.2
4,030,316	-				-1.8
4,030,326	+				-3.1
4,030,355	-				-0.8
4,030,357	+				-1.8
4,030,378	-				-2.2
4,030,407	+				+1.0
4,030,407	+				-3.4
4,030,408	-				+0.6
4,030,431	+				-2.9
4,030,472	+				+0.7
4,030,477	-				-1.8
4,030,483	+				-0.6
4,030,484	-				+0.1
4,030,484	-				-1.3
4,030,488	+				+0.0
4,030,493	-				-1.9
4,030,551	+				-0.2
4,030,551	+				+1.7
4,030,552	-				-0.5
4,030,559	+				+0.4
4,030,560	-				-1.4
4,030,572	-				-0.8
4,030,596	+				-2.6
4,030,600	+				+0.0
4,030,605	+				-3.3
4,030,643	-				-1.7
4,030,645	+				-2.3
4,030,652	-				-1.6
4,030,652	-				+2.0
4,030,656	+				-1.0
4,030,706	+		BT3161	0.12	+0.1
4,030,707	-		BT3161	0.12	+0.1
4,030,707	-		BT3161	0.12	+1.4
4,030,708	+		BT3161	0.12	-0.6
4,030,835	+		BT3161	0.31	-2.7
4,030,836	-		BT3161	0.31	-2.6
4,030,839	+		BT3161	0.31	+1.2
4,030,839	+		BT3161	0.31	-0.7
4,030,840	-		BT3161	0.32	+1.0
4,030,840	-		BT3161	0.32	-2.7
4,030,913	-		BT3161	0.42	-0.5
4,030,964	-		BT3161	0.50	-3.5
4,030,982	-		BT3161	0.53	-3.1
4,031,015	-		BT3161	0.58	-1.8
4,031,115	+		BT3161	0.72	-0.1
4,031,115	+		BT3161	0.72	+1.8
4,031,140	+		BT3161	0.76	+0.9
4,031,173	-		BT3161	0.81	-0.3
4,031,253	+				-2.1
4,031,278	-				-1.3
4,031,278	-				-1.5
4,031,278	-				-0.6
4,031,286	+				-2.5
4,031,287	-				-1.1
4,031,292	+				-1.8
4,031,293	-				-2.7
4,031,293	-				+2.6
4,031,363	+				-2.0
4,031,386	+				-1.8
4,031,386	+				-1.6
4,031,386	+				-1.0
4,031,386	+				+1.0
4,031,407	+				-1.6