Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2620

Experiment: Heparin from porcine intestinal mucosa (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Heparin from porcine intestinal mucosa (C)
3,261,915	+		BT2619	0.87	+0.9
3,261,946	+		BT2619	0.88	-0.1
3,261,947	-		BT2619	0.88	+2.0
3,261,997	+				-1.3
3,262,001	+				-2.4
3,262,042	+				-1.1
3,262,043	-				-0.8
3,262,159	+				-2.8
3,262,164	-				+1.4
3,262,167	-				-1.1
3,262,193	+				+0.5
3,262,194	-				+0.2
3,262,194	-				-2.5
3,262,194	-				-0.1
3,262,195	+				+1.5
3,262,196	-				+0.1
3,262,196	-				-1.9
3,262,202	+				+0.3
3,262,304	+				+0.7
3,262,305	-				+1.5
3,262,340	-				-2.2
3,262,358	-				-0.7
3,262,367	+				+0.6
3,262,370	+				-0.3
3,262,371	-				-1.8
3,262,388	+				-0.7
3,262,389	-				+0.9
3,262,392	-				-1.1
3,262,392	-				-0.1
3,262,392	-				+0.2
3,262,412	+				-2.3
3,262,415	-				-1.1
3,262,441	+				+0.1
3,262,441	+				+0.7
3,262,447	+				+0.9
3,262,448	-				-3.5
3,262,448	-				-2.7
3,262,450	+				-0.9
3,262,451	-				+0.5
3,262,456	-				-3.0
3,262,483	-				-1.4
3,262,493	+				-1.3
3,262,494	-				-1.4
3,262,498	-				+0.0
3,262,500	+				-3.7
3,262,501	-				-0.9
3,262,536	-				-3.7
3,262,552	+				-3.6
3,262,561	-				+0.6
3,262,572	+				+0.9
3,262,582	+				+0.4
3,262,636	-				+1.0
3,262,637	+				+1.3
3,262,637	+				+1.3
3,262,660	+				-2.1
3,262,702	-				-1.5
3,262,714	+				-0.1
3,262,714	+				-3.3
3,262,715	-				+1.2
3,262,740	+				-3.5
3,262,741	-				+0.4
3,262,741	-				-2.8
3,262,741	-				-2.0
3,262,744	+				+0.4
3,262,745	-				-2.3
3,262,745	-				-0.2
3,262,747	-				+2.1
3,262,784	+				+0.6
3,262,813	-				-2.1
3,262,817	-				-2.6
3,262,820	+				-1.7
3,262,821	-				-0.1
3,262,836	-				-2.3
3,262,867	-				-2.1
3,262,910	-				+0.2
3,262,944	+				-2.7
3,262,950	+				-3.2
3,262,950	+				-1.2
3,262,997	-				-2.6
3,262,997	-				+0.5
3,263,015	+				-0.1
3,263,016	-				-3.1
3,263,092	-				-0.7
3,263,164	-		BT2620	0.13	-0.0
3,263,254	+		BT2620	0.18	-1.5
3,263,254	+		BT2620	0.18	-0.7
3,263,257	+		BT2620	0.18	-0.7
3,263,258	-		BT2620	0.18	-1.3
3,263,310	+		BT2620	0.21	-1.5
3,263,316	+		BT2620	0.21	+0.9
3,263,324	-		BT2620	0.21	-4.3
3,263,340	-		BT2620	0.22	-3.8
3,263,340	-		BT2620	0.22	-1.5
3,263,368	+		BT2620	0.24	-2.7
3,263,369	-		BT2620	0.24	-1.3
3,263,369	-		BT2620	0.24	-1.8
3,263,369	-		BT2620	0.24	-2.0
3,263,371	-		BT2620	0.24	-2.1
3,263,371	-		BT2620	0.24	-1.5
3,263,388	+		BT2620	0.25	-1.7
3,263,394	-		BT2620	0.25	+1.9
3,263,394	-		BT2620	0.25	-4.6
3,263,405	+		BT2620	0.25	-0.8
3,263,406	-		BT2620	0.26	-1.7
3,263,450	+		BT2620	0.28	-2.0
3,263,453	+		BT2620	0.28	-1.3
3,263,456	+		BT2620	0.28	-2.6
3,263,527	+		BT2620	0.32	+0.2
3,263,577	-		BT2620	0.34	-3.0
3,263,578	+		BT2620	0.34	-0.5
3,263,579	-		BT2620	0.34	+1.4
3,263,579	-		BT2620	0.34	-3.0
3,263,582	+		BT2620	0.35	-2.7
3,263,655	+		BT2620	0.38	-0.6
3,263,665	-		BT2620	0.39	-1.0
3,263,688	-		BT2620	0.40	+0.9
3,263,691	+		BT2620	0.40	+0.9
3,263,700	-		BT2620	0.41	-2.1
3,263,790	-		BT2620	0.45	+0.4
3,263,802	-		BT2620	0.46	-0.7
3,263,840	+		BT2620	0.48	+0.3
3,263,840	+		BT2620	0.48	-1.6
3,263,843	+		BT2620	0.48	-1.9
3,263,843	+		BT2620	0.48	-2.3
3,263,844	-		BT2620	0.48	+1.1
3,263,844	-		BT2620	0.48	-3.1
3,263,844	-		BT2620	0.48	-0.4
3,263,846	+		BT2620	0.48	-0.1
3,263,847	-		BT2620	0.48	-3.3
3,263,860	+		BT2620	0.49	+3.6
3,263,881	+		BT2620	0.50	-1.3
3,263,884	+		BT2620	0.50	+0.7
3,263,885	-		BT2620	0.50	-0.4
3,263,885	-		BT2620	0.50	+0.3
3,263,905	+		BT2620	0.51	-1.7
3,263,981	+		BT2620	0.55	-0.8
3,263,982	-		BT2620	0.55	-0.5
3,264,006	-		BT2620	0.56	-1.5
3,264,006	-		BT2620	0.56	+1.3
3,264,018	+		BT2620	0.57	-1.1
3,264,018	+		BT2620	0.57	-0.9
3,264,018	+		BT2620	0.57	+2.9
3,264,019	-		BT2620	0.57	-1.0
3,264,019	-		BT2620	0.57	-2.3
3,264,019	-		BT2620	0.57	+0.1
3,264,019	-		BT2620	0.57	-4.1
3,264,019	-		BT2620	0.57	-3.1
3,264,117	-		BT2620	0.62	-1.5
3,264,117	-		BT2620	0.62	-1.6
3,264,119	-		BT2620	0.62	-0.7
3,264,135	+		BT2620	0.63	-1.8
3,264,143	+		BT2620	0.63	-0.7
3,264,173	+		BT2620	0.65	+0.9
3,264,199	-		BT2620	0.66	-1.5
3,264,203	+		BT2620	0.66	-0.1
3,264,230	+		BT2620	0.68	-0.1
3,264,230	+		BT2620	0.68	-1.8
3,264,265	-		BT2620	0.70	+0.5
3,264,265	-		BT2620	0.70	+3.8
3,264,290	+		BT2620	0.71	-0.3
3,264,304	-		BT2620	0.72	+0.4
3,264,352	-		BT2620	0.74	-0.7
3,264,355	+		BT2620	0.74	+0.9
3,264,356	-		BT2620	0.74	+0.0
3,264,367	+		BT2620	0.75	+0.9
3,264,377	+		BT2620	0.75	-0.7
3,264,456	-		BT2620	0.79	-2.1
3,264,500	+		BT2620	0.82	-3.2
3,264,543	+		BT2620	0.84	-0.6
3,264,556	+		BT2620	0.85	-1.1
3,264,557	-		BT2620	0.85	-2.1
3,264,568	-		BT2620	0.85	-1.4
3,264,612	+		BT2620	0.87	-2.2
3,264,670	-				-1.0
3,264,725	+				-2.3
3,264,726	-				-2.8
3,264,727	+				+0.9
3,264,750	+				+0.5
3,264,813	+				-2.1
3,264,834	-				-1.4
3,264,891	+				-0.1
3,264,894	+				-0.5
3,264,966	+				+0.8
3,265,014	+		BT2621	0.10	-2.5
3,265,014	+		BT2621	0.10	-0.1
3,265,038	+		BT2621	0.12	-0.7
3,265,039	-		BT2621	0.12	-2.2
3,265,048	+		BT2621	0.13	-2.3
3,265,118	+		BT2621	0.18	+0.0
3,265,119	-		BT2621	0.18	+0.6
3,265,119	-		BT2621	0.18	-2.8
3,265,122	+		BT2621	0.18	-2.6
3,265,122	+		BT2621	0.18	-1.8
3,265,122	+		BT2621	0.18	+0.7
3,265,122	+		BT2621	0.18	-1.7
3,265,131	+		BT2621	0.19	-3.2
3,265,132	-		BT2621	0.19	-1.1
3,265,198	+		BT2621	0.24	-0.9
3,265,198	+		BT2621	0.24	+3.4
3,265,203	+		BT2621	0.24	-2.0
3,265,203	+		BT2621	0.24	-4.1
3,265,269	+		BT2621	0.29	+2.0
3,265,329	+		BT2621	0.34	+0.6
3,265,329	+		BT2621	0.34	+0.3
3,265,330	-		BT2621	0.34	+0.9
3,265,334	-		BT2621	0.34	-0.3
3,265,420	+		BT2621	0.41	-5.6
3,265,421	-		BT2621	0.41	-1.5
3,265,429	+		BT2621	0.42	+0.7
3,265,429	+		BT2621	0.42	-0.1
3,265,430	-		BT2621	0.42	+0.9
3,265,451	-		BT2621	0.43	-1.7
3,265,458	+		BT2621	0.44	-2.0
3,265,459	-		BT2621	0.44	-1.1
3,265,495	-		BT2621	0.47	-0.9
3,265,503	+		BT2621	0.47	-1.7
3,265,506	+		BT2621	0.48	+0.1
3,265,506	+		BT2621	0.48	-2.6
3,265,507	-		BT2621	0.48	-1.5
3,265,509	+		BT2621	0.48	-2.0
3,265,512	+		BT2621	0.48	+0.5
3,265,574	-		BT2621	0.53	-0.7
3,265,620	+		BT2621	0.56	+0.4
3,265,627	+		BT2621	0.57	-2.6
3,265,628	-		BT2621	0.57	-1.1
3,265,672	+		BT2621	0.60	+2.3
3,265,672	+		BT2621	0.60	-0.7
3,265,707	+		BT2621	0.63	-2.6
3,265,707	+		BT2621	0.63	+0.1
3,265,708	-		BT2621	0.63	-3.2
3,265,710	+		BT2621	0.63	-1.3
3,265,714	+		BT2621	0.63	-1.5
3,265,714	+		BT2621	0.63	-0.1
3,265,715	-		BT2621	0.63	-1.1
3,265,797	+		BT2621	0.70	-2.7
3,265,840	-		BT2621	0.73	-0.6
3,265,850	+		BT2621	0.74	-2.7
3,265,850	+		BT2621	0.74	+0.1