Experiment: Heparin from porcine intestinal mucosa (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0858 and BT0859 are separated by 14 nucleotides BT0859 and BT0860 are separated by 49 nucleotides BT0860 and BT0861 are separated by 17 nucleotides
BT0858: BT0858 - conserved hypothetical protein (NCBI ptt file), at 1,047,752 to 1,049,002
BT0858
BT0859: BT0859 - conserved hypothetical protein (NCBI ptt file), at 1,049,017 to 1,051,392
BT0859
BT0860: BT0860 - putative ABC transporter ATP-binding protein (NCBI ptt file), at 1,051,442 to 1,052,116
BT0860
BT0861: BT0861 - putative ABC transporter permease (NCBI ptt file), at 1,052,134 to 1,054,479
BT0861
Position (kb) 1049
1050
1051
1052 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1048.127 kb on - strand, within BT0858 at 1048.200 kb on - strand, within BT0858 at 1048.416 kb on - strand, within BT0858 at 1048.477 kb on - strand, within BT0858 at 1048.556 kb on - strand, within BT0858 at 1048.556 kb on - strand, within BT0858 at 1048.561 kb on - strand, within BT0858 at 1048.640 kb on + strand, within BT0858 at 1049.034 kb on - strand at 1049.067 kb on + strand at 1049.068 kb on - strand at 1049.097 kb on - strand at 1049.100 kb on + strand at 1049.120 kb on + strand at 1049.158 kb on + strand at 1049.192 kb on + strand at 1049.271 kb on + strand, within BT0859 at 1049.289 kb on + strand, within BT0859 at 1049.392 kb on - strand, within BT0859 at 1049.430 kb on + strand, within BT0859 at 1049.449 kb on - strand, within BT0859 at 1049.491 kb on + strand at 1049.491 kb on + strand, within BT0859 at 1049.541 kb on + strand, within BT0859 at 1049.727 kb on + strand, within BT0859 at 1049.773 kb on - strand, within BT0859 at 1049.847 kb on - strand, within BT0859 at 1049.868 kb on + strand, within BT0859 at 1049.869 kb on - strand, within BT0859 at 1049.922 kb on + strand, within BT0859 at 1049.945 kb on + strand, within BT0859 at 1050.027 kb on + strand, within BT0859 at 1050.151 kb on - strand, within BT0859 at 1050.151 kb on - strand, within BT0859 at 1050.153 kb on + strand, within BT0859 at 1050.180 kb on - strand, within BT0859 at 1050.182 kb on - strand, within BT0859 at 1050.184 kb on - strand, within BT0859 at 1050.218 kb on - strand, within BT0859 at 1050.252 kb on - strand, within BT0859 at 1050.252 kb on - strand, within BT0859 at 1050.314 kb on - strand, within BT0859 at 1050.315 kb on + strand, within BT0859 at 1050.631 kb on - strand, within BT0859 at 1050.678 kb on + strand, within BT0859 at 1050.833 kb on - strand, within BT0859 at 1051.414 kb on - strand at 1051.513 kb on - strand, within BT0860 at 1051.832 kb on - strand, within BT0860 at 1051.909 kb on - strand, within BT0860 at 1051.922 kb on - strand, within BT0860 at 1052.032 kb on - strand, within BT0860 at 1052.069 kb on - strand at 1052.146 kb on + strand at 1052.147 kb on - strand at 1052.278 kb on - strand at 1052.341 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heparin from porcine intestinal mucosa (C) remove 1,048,127 - BT0858 0.30 -0.0 1,048,200 - BT0858 0.36 -3.0 1,048,416 - BT0858 0.53 -0.4 1,048,477 - BT0858 0.58 -2.1 1,048,556 - BT0858 0.64 -1.9 1,048,556 - BT0858 0.64 -3.6 1,048,561 - BT0858 0.65 -1.6 1,048,640 + BT0858 0.71 -3.4 1,049,034 - -2.4 1,049,067 + -2.7 1,049,068 - +0.1 1,049,097 - -1.4 1,049,100 + +1.3 1,049,120 + -1.2 1,049,158 + -1.4 1,049,192 + +0.9 1,049,271 + BT0859 0.11 -2.6 1,049,289 + BT0859 0.11 -0.6 1,049,392 - BT0859 0.16 -1.7 1,049,430 + BT0859 0.17 -1.6 1,049,449 - BT0859 0.18 +1.0 1,049,491 + -0.3 1,049,491 + BT0859 0.20 +0.4 1,049,541 + BT0859 0.22 +1.0 1,049,727 + BT0859 0.30 -1.4 1,049,773 - BT0859 0.32 -1.9 1,049,847 - BT0859 0.35 -2.2 1,049,868 + BT0859 0.36 +0.4 1,049,869 - BT0859 0.36 -1.8 1,049,922 + BT0859 0.38 -3.1 1,049,945 + BT0859 0.39 -0.8 1,050,027 + BT0859 0.43 -0.6 1,050,151 - BT0859 0.48 -1.9 1,050,151 - BT0859 0.48 +2.3 1,050,153 + BT0859 0.48 -2.0 1,050,180 - BT0859 0.49 -4.0 1,050,182 - BT0859 0.49 -0.9 1,050,184 - BT0859 0.49 +0.8 1,050,218 - BT0859 0.51 -3.1 1,050,252 - BT0859 0.52 -2.6 1,050,252 - BT0859 0.52 +1.3 1,050,314 - BT0859 0.55 -2.1 1,050,315 + BT0859 0.55 -2.1 1,050,631 - BT0859 0.68 -2.9 1,050,678 + BT0859 0.70 -1.1 1,050,833 - BT0859 0.76 -1.9 1,051,414 - +1.6 1,051,513 - BT0860 0.11 +0.4 1,051,832 - BT0860 0.58 -0.3 1,051,909 - BT0860 0.69 -0.6 1,051,922 - BT0860 0.71 +0.9 1,052,032 - BT0860 0.87 -0.0 1,052,069 - -2.6 1,052,146 + -1.1 1,052,147 - -1.9 1,052,278 - +1.9 1,052,341 - +0.8
Or see this region's nucleotide sequence