Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0143

Experiment: MoLS4 with L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0141 and nifA-2 are separated by 597 nucleotidesnifA-2 and DVUA0144 are separated by 214 nucleotidesDVUA0144 and DORF2315 are separated by 499 nucleotides DVUA0141: DVUA0141 - hypothetical protein (TIGR), at 183,952 to 184,188 DVUA0141 DVUA0143: nifA-2 - nif-specific regulatory protein (TIGR), at 184,786 to 186,333 nifA-2 DVUA0144: DVUA0144 - hypothetical protein (TIGR), at 186,548 to 186,691 DVUA0144 DORF2315: DORF2315 - no description, at 187,191 to 187,322 DORF2315 Position (kb) 184 185 186 187Strain fitness (log2 ratio) -2 -1 0 1at 184.031 kb on - strand, within DVUA0141at 184.133 kb on + strand, within DVUA0141at 184.156 kb on - strand, within DVUA0141at 184.317 kb on + strandat 184.325 kb on - strandat 184.348 kb on + strandat 184.348 kb on + strandat 184.391 kb on - strandat 184.497 kb on - strandat 184.583 kb on + strandat 184.661 kb on + strandat 184.669 kb on - strandat 184.669 kb on - strandat 184.699 kb on + strandat 184.774 kb on + strandat 184.791 kb on - strandat 184.823 kb on + strandat 184.883 kb on + strandat 184.888 kb on + strandat 184.891 kb on - strandat 184.891 kb on - strandat 184.891 kb on - strandat 184.940 kb on + strandat 184.941 kb on - strand, within nifA-2at 184.943 kb on - strand, within nifA-2at 184.970 kb on - strand, within nifA-2at 185.156 kb on - strand, within nifA-2at 185.177 kb on + strand, within nifA-2at 185.192 kb on + strand, within nifA-2at 185.202 kb on + strand, within nifA-2at 185.453 kb on - strand, within nifA-2at 185.457 kb on - strand, within nifA-2at 185.472 kb on - strand, within nifA-2at 185.474 kb on + strand, within nifA-2at 185.482 kb on - strand, within nifA-2at 185.493 kb on - strand, within nifA-2at 185.502 kb on - strand, within nifA-2at 185.512 kb on - strand, within nifA-2at 185.587 kb on - strand, within nifA-2at 185.638 kb on - strand, within nifA-2at 185.665 kb on + strand, within nifA-2at 185.673 kb on - strand, within nifA-2at 185.700 kb on + strand, within nifA-2at 185.837 kb on + strand, within nifA-2at 185.906 kb on + strand, within nifA-2at 186.033 kb on - strand, within nifA-2at 186.053 kb on + strand, within nifA-2at 186.053 kb on + strand, within nifA-2at 186.053 kb on + strand, within nifA-2at 186.053 kb on + strand, within nifA-2at 186.053 kb on + strand, within nifA-2at 186.053 kb on + strand, within nifA-2at 186.061 kb on - strand, within nifA-2at 186.068 kb on + strand, within nifA-2at 186.068 kb on + strand, within nifA-2at 186.314 kb on - strandat 186.370 kb on - strandat 186.466 kb on + strandat 186.497 kb on + strandat 186.527 kb on + strandat 186.547 kb on - strandat 186.629 kb on + strand, within DVUA0144at 186.631 kb on + strand, within DVUA0144at 186.699 kb on + strandat 186.726 kb on - strandat 186.735 kb on + strandat 186.759 kb on + strandat 186.773 kb on - strandat 186.787 kb on + strandat 186.805 kb on - strandat 186.845 kb on + strandat 186.850 kb on + strandat 186.858 kb on - strandat 186.920 kb on + strandat 186.975 kb on + strandat 186.977 kb on - strandat 187.014 kb on + strandat 187.099 kb on - strandat 187.109 kb on - strandat 187.288 kb on - strand, within DORF2315at 187.294 kb on + strand, within DORF2315

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan (N)
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184,031 - DVUA0141 0.33 -0.8
184,133 + DVUA0141 0.76 -0.3
184,156 - DVUA0141 0.86 -0.6
184,317 + +0.3
184,325 - -0.2
184,348 + -1.4
184,348 + -0.3
184,391 - +0.7
184,497 - -0.3
184,583 + -0.1
184,661 + -0.1
184,669 - +1.1
184,669 - -0.2
184,699 + +0.6
184,774 + +0.1
184,791 - +0.4
184,823 + -0.8
184,883 + -0.5
184,888 + -0.8
184,891 - -0.8
184,891 - -1.2
184,891 - -0.8
184,940 + -0.7
184,941 - nifA-2 DVUA0143 0.10 -1.5
184,943 - nifA-2 DVUA0143 0.10 -0.8
184,970 - nifA-2 DVUA0143 0.12 -1.5
185,156 - nifA-2 DVUA0143 0.24 -1.1
185,177 + nifA-2 DVUA0143 0.25 -0.7
185,192 + nifA-2 DVUA0143 0.26 -0.1
185,202 + nifA-2 DVUA0143 0.27 -0.1
185,453 - nifA-2 DVUA0143 0.43 -0.0
185,457 - nifA-2 DVUA0143 0.43 -1.1
185,472 - nifA-2 DVUA0143 0.44 +0.3
185,474 + nifA-2 DVUA0143 0.44 -0.5
185,482 - nifA-2 DVUA0143 0.45 -0.7
185,493 - nifA-2 DVUA0143 0.46 -1.6
185,502 - nifA-2 DVUA0143 0.46 -0.4
185,512 - nifA-2 DVUA0143 0.47 -1.3
185,587 - nifA-2 DVUA0143 0.52 -0.9
185,638 - nifA-2 DVUA0143 0.55 -1.0
185,665 + nifA-2 DVUA0143 0.57 -0.5
185,673 - nifA-2 DVUA0143 0.57 -0.8
185,700 + nifA-2 DVUA0143 0.59 -0.8
185,837 + nifA-2 DVUA0143 0.68 -1.9
185,906 + nifA-2 DVUA0143 0.72 +0.1
186,033 - nifA-2 DVUA0143 0.81 -1.0
186,053 + nifA-2 DVUA0143 0.82 -1.0
186,053 + nifA-2 DVUA0143 0.82 -0.5
186,053 + nifA-2 DVUA0143 0.82 +0.2
186,053 + nifA-2 DVUA0143 0.82 -0.1
186,053 + nifA-2 DVUA0143 0.82 -0.6
186,053 + nifA-2 DVUA0143 0.82 +0.0
186,061 - nifA-2 DVUA0143 0.82 -1.8
186,068 + nifA-2 DVUA0143 0.83 -0.5
186,068 + nifA-2 DVUA0143 0.83 -0.7
186,314 - -1.0
186,370 - -0.3
186,466 + -0.2
186,497 + -1.2
186,527 + -0.1
186,547 - -0.2
186,629 + DVUA0144 0.56 -0.5
186,631 + DVUA0144 0.58 -0.4
186,699 + -0.5
186,726 - -0.3
186,735 + +0.2
186,759 + -0.5
186,773 - -0.7
186,787 + -0.4
186,805 - +0.7
186,845 + -1.1
186,850 + +0.6
186,858 - -0.1
186,920 + -0.7
186,975 + -0.5
186,977 - +0.0
187,014 + -0.2
187,099 - -0.1
187,109 - -0.2
187,288 - DORF2315 0.73 +0.4
187,294 + DORF2315 0.78 -0.0

Or see this region's nucleotide sequence