Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0001

Experiment: MoLS4 with L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0001 and soj overlap by 2 nucleotidessoj and DVUA0003 are separated by 50 nucleotides DVUA0001: DVUA0001 - hypothetical protein (TIGR), at 699 to 872 DVUA0001 DVUA0002: soj - ParA family protein (TIGR), at 871 to 1,689 soj DVUA0003: DVUA0003 - hypothetical protein (TIGR), at 1,740 to 5,135 DVUA0003 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1at 0.028 kb on - strandat 0.036 kb on - strandat 0.197 kb on + strandat 0.251 kb on + strandat 0.304 kb on - strandat 0.309 kb on - strandat 0.318 kb on + strandat 0.384 kb on - strandat 0.401 kb on - strandat 0.510 kb on + strandat 0.518 kb on - strandat 0.533 kb on - strandat 0.560 kb on + strandat 0.593 kb on + strandat 0.837 kb on + strand, within DVUA0001at 0.837 kb on + strand, within DVUA0001at 1.709 kb on - strandat 1.709 kb on - strandat 1.709 kb on - strandat 1.709 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan (N)
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28 - -0.4
36 - -0.6
197 + -1.3
251 + -1.5
304 - -0.3
309 - -1.9
318 + -2.1
384 - -0.3
401 - -0.1
510 + -0.2
518 - -2.0
533 - -0.8
560 + -1.5
593 + -1.2
837 + DVUA0001 0.79 -1.8
837 + DVUA0001 0.79 -0.3
1,709 - -0.9
1,709 - -0.0
1,709 - -0.4
1,709 - -0.5

Or see this region's nucleotide sequence