Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1708

Experiment: MoLS4 with L-Tryptophan (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1705 and DVU1707 are separated by 49 nucleotidesDVU1707 and DVU1708 are separated by 2 nucleotidesDVU1708 and hsdM are separated by 2 nucleotides DVU1705: DVU1705 - type I restriction-modification enzyme, S subunit (TIGR), at 1,781,460 to 1,782,710 DVU1705 DVU1707: DVU1707 - hypothetical protein (TIGR), at 1,782,760 to 1,782,969 DVU1707 DVU1708: DVU1708 - conserved hypothetical protein (TIGR), at 1,782,972 to 1,783,985 DVU1708 DVU1709: hsdM - type I restriction-modification system, M subunit (TIGR), at 1,783,988 to 1,785,508 hsdM Position (kb) 1782 1783 1784Strain fitness (log2 ratio) -1 0 1at 1782.188 kb on - strand, within DVU1705at 1782.472 kb on - strand, within DVU1705at 1783.091 kb on - strand, within DVU1708at 1783.170 kb on + strand, within DVU1708at 1783.266 kb on - strand, within DVU1708at 1783.296 kb on - strand, within DVU1708at 1783.555 kb on + strand, within DVU1708at 1783.665 kb on + strand, within DVU1708at 1784.088 kb on - strandat 1784.218 kb on + strand, within hsdMat 1784.236 kb on - strand, within hsdMat 1784.373 kb on + strand, within hsdMat 1784.400 kb on + strand, within hsdMat 1784.479 kb on + strand, within hsdMat 1784.558 kb on - strand, within hsdMat 1784.692 kb on - strand, within hsdMat 1784.744 kb on + strand, within hsdMat 1784.753 kb on + strand, within hsdMat 1784.921 kb on - strand, within hsdMat 1784.935 kb on + strand, within hsdM

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan (N)
remove
1,782,188 - DVU1705 0.58 +0.2
1,782,472 - DVU1705 0.81 -0.5
1,783,091 - DVU1708 0.12 +0.0
1,783,170 + DVU1708 0.20 +0.1
1,783,266 - DVU1708 0.29 -0.3
1,783,296 - DVU1708 0.32 +1.5
1,783,555 + DVU1708 0.57 -1.3
1,783,665 + DVU1708 0.68 +0.5
1,784,088 - +0.2
1,784,218 + hsdM DVU1709 0.15 -0.2
1,784,236 - hsdM DVU1709 0.16 -0.2
1,784,373 + hsdM DVU1709 0.25 -0.2
1,784,400 + hsdM DVU1709 0.27 +0.9
1,784,479 + hsdM DVU1709 0.32 +1.1
1,784,558 - hsdM DVU1709 0.37 +0.4
1,784,692 - hsdM DVU1709 0.46 +1.3
1,784,744 + hsdM DVU1709 0.50 +0.1
1,784,753 + hsdM DVU1709 0.50 -1.1
1,784,921 - hsdM DVU1709 0.61 +0.5
1,784,935 + hsdM DVU1709 0.62 +0.2

Or see this region's nucleotide sequence