Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1145

Experiment: MoLS4 with L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1144 and DVU1145 are separated by 639 nucleotidesDVU1145 and DVU1146 are separated by 21 nucleotidesDVU1146 and DVU1147 are separated by 250 nucleotides DVU1144: DVU1144 - transcriptional regulator, Cro/CI family (TIGR), at 1,239,484 to 1,240,251 DVU1144 DVU1145: DVU1145 - hypothetical protein (TIGR), at 1,240,891 to 1,241,031 DVU1145 DVU1146: DVU1146 - transposase, degenerate (TIGR), at 1,241,053 to 1,241,586 DVU1146 DVU1147: DVU1147 - alginate o-acetyltransferase AlgI, putative (TIGR), at 1,241,837 to 1,243,216 DVU1147 Position (kb) 1240 1241 1242Strain fitness (log2 ratio) -2 -1 0 1 2at 1240.356 kb on + strandat 1240.498 kb on + strandat 1240.590 kb on - strandat 1240.602 kb on - strandat 1240.646 kb on - strandat 1240.704 kb on + strandat 1240.704 kb on + strandat 1240.745 kb on + strandat 1240.786 kb on + strandat 1240.837 kb on + strandat 1240.848 kb on - strandat 1240.862 kb on + strandat 1240.870 kb on - strandat 1240.878 kb on - strandat 1240.932 kb on + strand, within DVU1145at 1241.140 kb on - strand, within DVU1146at 1241.174 kb on - strand, within DVU1146at 1241.258 kb on + strand, within DVU1146at 1241.294 kb on + strand, within DVU1146at 1241.294 kb on + strand, within DVU1146at 1241.319 kb on + strand, within DVU1146at 1241.319 kb on + strand, within DVU1146at 1241.319 kb on + strand, within DVU1146at 1241.442 kb on + strand, within DVU1146at 1241.490 kb on - strand, within DVU1146at 1241.494 kb on + strand, within DVU1146at 1241.571 kb on + strandat 1241.571 kb on + strandat 1241.722 kb on + strandat 1241.778 kb on - strandat 1241.790 kb on + strandat 1241.800 kb on - strandat 1241.823 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan (N)
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1,240,356 + -0.3
1,240,498 + -0.4
1,240,590 - -0.2
1,240,602 - +0.5
1,240,646 - -0.0
1,240,704 + -1.1
1,240,704 + -0.7
1,240,745 + +0.0
1,240,786 + -1.1
1,240,837 + -0.4
1,240,848 - +0.2
1,240,862 + -0.2
1,240,870 - -0.4
1,240,878 - -0.3
1,240,932 + DVU1145 0.29 -0.7
1,241,140 - DVU1146 0.16 +0.6
1,241,174 - DVU1146 0.23 +2.1
1,241,258 + DVU1146 0.38 -0.4
1,241,294 + DVU1146 0.45 -1.1
1,241,294 + DVU1146 0.45 -0.3
1,241,319 + DVU1146 0.50 -0.2
1,241,319 + DVU1146 0.50 -0.0
1,241,319 + DVU1146 0.50 +0.2
1,241,442 + DVU1146 0.73 -0.6
1,241,490 - DVU1146 0.82 -0.7
1,241,494 + DVU1146 0.83 -0.1
1,241,571 + -0.3
1,241,571 + -0.4
1,241,722 + -1.8
1,241,778 - +0.2
1,241,790 + -0.1
1,241,800 - -0.5
1,241,823 - -0.4

Or see this region's nucleotide sequence