Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3788

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3787 and Rru_A3788 are separated by 122 nucleotidesRru_A3788 and Rru_A3789 are separated by 218 nucleotides Rru_A3787: Rru_A3787 - 2-nitropropane dioxygenase, NPD (NCBI), at 4,337,976 to 4,339,373 _A3787 Rru_A3788: Rru_A3788 - Ferric uptake regulator (FUR) family (NCBI), at 4,339,496 to 4,339,909 _A3788 Rru_A3789: Rru_A3789 - Protein of unknown function DUF1058 (NCBI), at 4,340,128 to 4,340,688 _A3789 Position (kb) 4339 4340Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4339.415 kb on + strandat 4339.436 kb on + strandat 4339.436 kb on + strandat 4339.437 kb on - strandat 4339.437 kb on - strandat 4339.437 kb on - strandat 4339.463 kb on + strandat 4339.463 kb on + strandat 4339.463 kb on + strandat 4339.464 kb on - strandat 4339.464 kb on - strandat 4339.522 kb on + strandat 4339.523 kb on - strandat 4339.757 kb on - strand, within Rru_A3788at 4339.762 kb on + strand, within Rru_A3788at 4339.762 kb on + strand, within Rru_A3788at 4339.762 kb on + strand, within Rru_A3788at 4339.762 kb on + strand, within Rru_A3788at 4339.763 kb on - strand, within Rru_A3788at 4339.763 kb on - strand, within Rru_A3788at 4339.775 kb on + strand, within Rru_A3788at 4339.776 kb on - strand, within Rru_A3788at 4339.776 kb on - strand, within Rru_A3788at 4339.892 kb on - strandat 4339.953 kb on + strandat 4339.991 kb on + strandat 4340.129 kb on + strandat 4340.129 kb on + strandat 4340.779 kb on + strandat 4340.779 kb on + strandat 4340.779 kb on + strandat 4340.780 kb on - strandat 4340.892 kb on + strandat 4340.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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4,339,415 + +0.4
4,339,436 + -2.0
4,339,436 + -0.8
4,339,437 - -1.6
4,339,437 - -0.5
4,339,437 - -0.2
4,339,463 + +0.6
4,339,463 + +0.6
4,339,463 + -0.3
4,339,464 - -1.5
4,339,464 - -1.5
4,339,522 + -0.8
4,339,523 - -0.5
4,339,757 - Rru_A3788 0.63 -1.8
4,339,762 + Rru_A3788 0.64 -1.5
4,339,762 + Rru_A3788 0.64 -1.1
4,339,762 + Rru_A3788 0.64 -1.4
4,339,762 + Rru_A3788 0.64 -0.6
4,339,763 - Rru_A3788 0.64 -1.2
4,339,763 - Rru_A3788 0.64 -4.9
4,339,775 + Rru_A3788 0.67 -1.3
4,339,776 - Rru_A3788 0.68 -1.1
4,339,776 - Rru_A3788 0.68 -2.1
4,339,892 - -1.3
4,339,953 + +0.2
4,339,991 + +0.4
4,340,129 + +0.6
4,340,129 + -3.0
4,340,779 + +0.3
4,340,779 + +0.0
4,340,779 + -0.1
4,340,780 - +1.4
4,340,892 + +0.2
4,340,892 + +0.1

Or see this region's nucleotide sequence