Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3734 and Rru_A3735 are separated by 44 nucleotides Rru_A3735 and Rru_A3736 overlap by 1 nucleotides Rru_A3736 and Rru_A3737 are separated by 90 nucleotides
Rru_A3734: Rru_A3734 - Glutamyl-tRNA synthetase, class Ic (NCBI), at 4,284,486 to 4,285,367
_A3734
Rru_A3735: Rru_A3735 - hypothetical protein (NCBI), at 4,285,412 to 4,285,876
_A3735
Rru_A3736: Rru_A3736 - hypothetical protein (NCBI), at 4,285,876 to 4,286,337
_A3736
Rru_A3737: Rru_A3737 - KAP P-loop (NCBI), at 4,286,428 to 4,287,762
_A3737
Position (kb) 4285
4286
4287 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4284.957 kb on + strand, within Rru_A3734 at 4284.957 kb on + strand, within Rru_A3734 at 4284.958 kb on - strand, within Rru_A3734 at 4284.958 kb on - strand, within Rru_A3734 at 4284.958 kb on - strand, within Rru_A3734 at 4284.958 kb on - strand, within Rru_A3734 at 4285.098 kb on + strand, within Rru_A3734 at 4285.099 kb on - strand, within Rru_A3734 at 4285.099 kb on - strand, within Rru_A3734 at 4285.099 kb on - strand, within Rru_A3734 at 4285.227 kb on + strand, within Rru_A3734 at 4285.270 kb on - strand, within Rru_A3734 at 4285.366 kb on - strand at 4285.508 kb on - strand, within Rru_A3735 at 4285.906 kb on + strand at 4285.906 kb on + strand at 4285.906 kb on + strand at 4285.907 kb on - strand at 4285.959 kb on + strand, within Rru_A3736 at 4285.981 kb on + strand, within Rru_A3736 at 4285.982 kb on - strand, within Rru_A3736 at 4285.982 kb on - strand, within Rru_A3736 at 4286.029 kb on - strand, within Rru_A3736 at 4286.061 kb on + strand, within Rru_A3736 at 4286.071 kb on + strand, within Rru_A3736 at 4286.072 kb on - strand, within Rru_A3736 at 4286.201 kb on + strand, within Rru_A3736 at 4286.202 kb on - strand, within Rru_A3736 at 4286.202 kb on - strand, within Rru_A3736 at 4286.266 kb on - strand, within Rru_A3736 at 4286.266 kb on - strand, within Rru_A3736 at 4286.266 kb on - strand, within Rru_A3736 at 4286.346 kb on + strand at 4286.346 kb on + strand at 4286.346 kb on + strand at 4286.346 kb on + strand at 4286.347 kb on - strand at 4286.349 kb on - strand at 4286.398 kb on - strand at 4286.423 kb on + strand at 4286.880 kb on + strand, within Rru_A3737 at 4286.881 kb on - strand, within Rru_A3737 at 4286.902 kb on - strand, within Rru_A3737 at 4286.902 kb on - strand, within Rru_A3737 at 4286.911 kb on - strand, within Rru_A3737 at 4287.135 kb on - strand, within Rru_A3737 at 4287.235 kb on + strand, within Rru_A3737
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 4,284,957 + Rru_A3734 0.53 +0.2 4,284,957 + Rru_A3734 0.53 -0.1 4,284,958 - Rru_A3734 0.54 +0.3 4,284,958 - Rru_A3734 0.54 +0.6 4,284,958 - Rru_A3734 0.54 -0.1 4,284,958 - Rru_A3734 0.54 +1.0 4,285,098 + Rru_A3734 0.69 +0.6 4,285,099 - Rru_A3734 0.70 -0.1 4,285,099 - Rru_A3734 0.70 +0.2 4,285,099 - Rru_A3734 0.70 -0.2 4,285,227 + Rru_A3734 0.84 -0.6 4,285,270 - Rru_A3734 0.89 -0.4 4,285,366 - -4.0 4,285,508 - Rru_A3735 0.21 +0.6 4,285,906 + +0.6 4,285,906 + +0.5 4,285,906 + -0.4 4,285,907 - -0.7 4,285,959 + Rru_A3736 0.18 +0.6 4,285,981 + Rru_A3736 0.23 -0.1 4,285,982 - Rru_A3736 0.23 -0.1 4,285,982 - Rru_A3736 0.23 -0.1 4,286,029 - Rru_A3736 0.33 +0.6 4,286,061 + Rru_A3736 0.40 -0.3 4,286,071 + Rru_A3736 0.42 -1.4 4,286,072 - Rru_A3736 0.42 +0.6 4,286,201 + Rru_A3736 0.70 -0.8 4,286,202 - Rru_A3736 0.71 -1.7 4,286,202 - Rru_A3736 0.71 +0.0 4,286,266 - Rru_A3736 0.84 +0.2 4,286,266 - Rru_A3736 0.84 -0.2 4,286,266 - Rru_A3736 0.84 -0.1 4,286,346 + +0.1 4,286,346 + +0.6 4,286,346 + +0.6 4,286,346 + -1.1 4,286,347 - +0.4 4,286,349 - +0.6 4,286,398 - -1.6 4,286,423 + -0.2 4,286,880 + Rru_A3737 0.34 -0.2 4,286,881 - Rru_A3737 0.34 -1.0 4,286,902 - Rru_A3737 0.36 +0.6 4,286,902 - Rru_A3737 0.36 -1.4 4,286,911 - Rru_A3737 0.36 -0.1 4,287,135 - Rru_A3737 0.53 -0.6 4,287,235 + Rru_A3737 0.60 -0.1
Or see this region's nucleotide sequence