Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3699

Experiment: L-Malic Acid (C) with ammonium chloride; high light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3698 and Rru_A3699 are separated by 220 nucleotidesRru_A3699 and Rru_A3700 overlap by 4 nucleotides Rru_A3698: Rru_A3698 - Outer membrane lipoprotein carrier protein LolA (NCBI), at 4,244,658 to 4,245,323 _A3698 Rru_A3699: Rru_A3699 - Acriflavin resistance protein (NCBI), at 4,245,544 to 4,248,633 _A3699 Rru_A3700: Rru_A3700 - Secretion protein HlyD (NCBI), at 4,248,630 to 4,249,775 _A3700 Position (kb) 4245 4246 4247 4248 4249Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4244.562 kb on + strandat 4244.567 kb on - strandat 4244.567 kb on - strandat 4245.414 kb on - strandat 4245.517 kb on - strandat 4245.545 kb on + strandat 4245.630 kb on + strandat 4245.630 kb on + strandat 4245.630 kb on + strandat 4245.631 kb on - strandat 4245.631 kb on - strandat 4245.631 kb on - strandat 4245.632 kb on + strandat 4245.632 kb on + strandat 4245.632 kb on + strandat 4245.633 kb on - strandat 4245.633 kb on - strandat 4245.633 kb on - strandat 4245.633 kb on - strandat 4245.633 kb on - strandat 4245.633 kb on - strandat 4245.930 kb on + strand, within Rru_A3699at 4245.931 kb on - strand, within Rru_A3699at 4245.932 kb on + strand, within Rru_A3699at 4245.932 kb on + strand, within Rru_A3699at 4245.932 kb on + strand, within Rru_A3699at 4245.932 kb on + strand, within Rru_A3699at 4245.932 kb on + strand, within Rru_A3699at 4245.932 kb on + strand, within Rru_A3699at 4245.932 kb on + strand, within Rru_A3699at 4245.933 kb on - strand, within Rru_A3699at 4245.933 kb on - strand, within Rru_A3699at 4245.933 kb on - strand, within Rru_A3699at 4245.933 kb on - strand, within Rru_A3699at 4245.933 kb on - strand, within Rru_A3699at 4245.933 kb on - strand, within Rru_A3699at 4245.933 kb on - strand, within Rru_A3699at 4245.933 kb on - strand, within Rru_A3699at 4246.145 kb on + strand, within Rru_A3699at 4246.342 kb on - strand, within Rru_A3699at 4246.343 kb on + strand, within Rru_A3699at 4246.343 kb on + strand, within Rru_A3699at 4246.343 kb on + strand, within Rru_A3699at 4246.344 kb on - strand, within Rru_A3699at 4246.344 kb on - strand, within Rru_A3699at 4246.344 kb on - strand, within Rru_A3699at 4246.344 kb on - strand, within Rru_A3699at 4246.344 kb on - strand, within Rru_A3699at 4246.406 kb on + strand, within Rru_A3699at 4246.406 kb on + strand, within Rru_A3699at 4246.407 kb on - strand, within Rru_A3699at 4246.407 kb on - strand, within Rru_A3699at 4246.422 kb on + strand, within Rru_A3699at 4246.439 kb on + strand, within Rru_A3699at 4246.440 kb on - strand, within Rru_A3699at 4246.440 kb on - strand, within Rru_A3699at 4246.440 kb on - strand, within Rru_A3699at 4246.634 kb on + strand, within Rru_A3699at 4246.635 kb on - strand, within Rru_A3699at 4246.854 kb on + strand, within Rru_A3699at 4246.854 kb on + strand, within Rru_A3699at 4246.854 kb on + strand, within Rru_A3699at 4246.855 kb on - strand, within Rru_A3699at 4246.855 kb on - strand, within Rru_A3699at 4246.914 kb on + strand, within Rru_A3699at 4246.914 kb on + strand, within Rru_A3699at 4246.914 kb on + strand, within Rru_A3699at 4246.914 kb on + strand, within Rru_A3699at 4246.914 kb on + strand, within Rru_A3699at 4246.914 kb on + strand, within Rru_A3699at 4246.915 kb on - strand, within Rru_A3699at 4246.915 kb on - strand, within Rru_A3699at 4246.915 kb on - strand, within Rru_A3699at 4246.915 kb on - strand, within Rru_A3699at 4246.916 kb on + strand, within Rru_A3699at 4246.916 kb on + strand, within Rru_A3699at 4246.917 kb on - strand, within Rru_A3699at 4246.917 kb on - strand, within Rru_A3699at 4247.015 kb on + strand, within Rru_A3699at 4247.016 kb on - strand, within Rru_A3699at 4247.280 kb on + strand, within Rru_A3699at 4247.281 kb on - strand, within Rru_A3699at 4247.298 kb on - strand, within Rru_A3699at 4247.298 kb on - strand, within Rru_A3699at 4247.672 kb on + strand, within Rru_A3699at 4247.961 kb on + strand, within Rru_A3699at 4247.961 kb on + strand, within Rru_A3699at 4247.961 kb on + strand, within Rru_A3699at 4247.961 kb on + strand, within Rru_A3699at 4248.167 kb on + strand, within Rru_A3699at 4248.168 kb on - strand, within Rru_A3699at 4248.168 kb on - strand, within Rru_A3699at 4248.398 kb on + strandat 4248.398 kb on + strandat 4248.399 kb on - strandat 4248.507 kb on + strandat 4248.877 kb on + strand, within Rru_A3700at 4248.877 kb on + strand, within Rru_A3700at 4248.877 kb on + strand, within Rru_A3700at 4248.877 kb on + strand, within Rru_A3700at 4248.878 kb on - strand, within Rru_A3700at 4248.878 kb on - strand, within Rru_A3700at 4248.878 kb on - strand, within Rru_A3700at 4248.901 kb on + strand, within Rru_A3700at 4248.901 kb on + strand, within Rru_A3700at 4248.901 kb on + strand, within Rru_A3700at 4248.902 kb on - strand, within Rru_A3700at 4248.902 kb on - strand, within Rru_A3700at 4248.902 kb on - strand, within Rru_A3700at 4249.035 kb on - strand, within Rru_A3700at 4249.059 kb on - strand, within Rru_A3700at 4249.222 kb on + strand, within Rru_A3700at 4249.222 kb on + strand, within Rru_A3700at 4249.223 kb on - strand, within Rru_A3700at 4249.223 kb on - strand, within Rru_A3700at 4249.223 kb on - strand, within Rru_A3700at 4249.223 kb on - strand, within Rru_A3700at 4249.326 kb on - strand, within Rru_A3700

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
remove
4,244,562 + +0.3
4,244,567 - -0.1
4,244,567 - +0.1
4,245,414 - +0.1
4,245,517 - +0.4
4,245,545 + +0.1
4,245,630 + -2.8
4,245,630 + -3.1
4,245,630 + -4.4
4,245,631 - -3.9
4,245,631 - -1.4
4,245,631 - -1.8
4,245,632 + -3.4
4,245,632 + -2.8
4,245,632 + -3.9
4,245,633 - +0.0
4,245,633 - -4.0
4,245,633 - -3.4
4,245,633 - -3.0
4,245,633 - -4.5
4,245,633 - -3.2
4,245,930 + Rru_A3699 0.12 -3.6
4,245,931 - Rru_A3699 0.13 -3.6
4,245,932 + Rru_A3699 0.13 +0.6
4,245,932 + Rru_A3699 0.13 -2.6
4,245,932 + Rru_A3699 0.13 +0.6
4,245,932 + Rru_A3699 0.13 -1.4
4,245,932 + Rru_A3699 0.13 +0.6
4,245,932 + Rru_A3699 0.13 -3.2
4,245,932 + Rru_A3699 0.13 -3.0
4,245,933 - Rru_A3699 0.13 -3.3
4,245,933 - Rru_A3699 0.13 -3.1
4,245,933 - Rru_A3699 0.13 +0.6
4,245,933 - Rru_A3699 0.13 -1.1
4,245,933 - Rru_A3699 0.13 -3.7
4,245,933 - Rru_A3699 0.13 -2.9
4,245,933 - Rru_A3699 0.13 -2.3
4,245,933 - Rru_A3699 0.13 -2.9
4,246,145 + Rru_A3699 0.19 -2.8
4,246,342 - Rru_A3699 0.26 -1.1
4,246,343 + Rru_A3699 0.26 -3.2
4,246,343 + Rru_A3699 0.26 -2.2
4,246,343 + Rru_A3699 0.26 -0.0
4,246,344 - Rru_A3699 0.26 -3.1
4,246,344 - Rru_A3699 0.26 -0.4
4,246,344 - Rru_A3699 0.26 -2.8
4,246,344 - Rru_A3699 0.26 -4.5
4,246,344 - Rru_A3699 0.26 +0.6
4,246,406 + Rru_A3699 0.28 -3.6
4,246,406 + Rru_A3699 0.28 -4.1
4,246,407 - Rru_A3699 0.28 -2.7
4,246,407 - Rru_A3699 0.28 -3.2
4,246,422 + Rru_A3699 0.28 -2.5
4,246,439 + Rru_A3699 0.29 -3.0
4,246,440 - Rru_A3699 0.29 +0.6
4,246,440 - Rru_A3699 0.29 -1.6
4,246,440 - Rru_A3699 0.29 -3.2
4,246,634 + Rru_A3699 0.35 -1.4
4,246,635 - Rru_A3699 0.35 -2.9
4,246,854 + Rru_A3699 0.42 -1.8
4,246,854 + Rru_A3699 0.42 -4.0
4,246,854 + Rru_A3699 0.42 -4.1
4,246,855 - Rru_A3699 0.42 -3.8
4,246,855 - Rru_A3699 0.42 -2.2
4,246,914 + Rru_A3699 0.44 -2.0
4,246,914 + Rru_A3699 0.44 -3.6
4,246,914 + Rru_A3699 0.44 -3.2
4,246,914 + Rru_A3699 0.44 -2.3
4,246,914 + Rru_A3699 0.44 -3.1
4,246,914 + Rru_A3699 0.44 -2.7
4,246,915 - Rru_A3699 0.44 -2.6
4,246,915 - Rru_A3699 0.44 -2.4
4,246,915 - Rru_A3699 0.44 +0.6
4,246,915 - Rru_A3699 0.44 -3.9
4,246,916 + Rru_A3699 0.44 -2.8
4,246,916 + Rru_A3699 0.44 -3.5
4,246,917 - Rru_A3699 0.44 -4.5
4,246,917 - Rru_A3699 0.44 -3.7
4,247,015 + Rru_A3699 0.48 -3.1
4,247,016 - Rru_A3699 0.48 -3.1
4,247,280 + Rru_A3699 0.56 +0.0
4,247,281 - Rru_A3699 0.56 -3.9
4,247,298 - Rru_A3699 0.57 -1.8
4,247,298 - Rru_A3699 0.57 -1.5
4,247,672 + Rru_A3699 0.69 +0.6
4,247,961 + Rru_A3699 0.78 +0.6
4,247,961 + Rru_A3699 0.78 -3.1
4,247,961 + Rru_A3699 0.78 -2.9
4,247,961 + Rru_A3699 0.78 -3.7
4,248,167 + Rru_A3699 0.85 -3.1
4,248,168 - Rru_A3699 0.85 -3.0
4,248,168 - Rru_A3699 0.85 -4.0
4,248,398 + -4.1
4,248,398 + +0.2
4,248,399 - -2.8
4,248,507 + -5.0
4,248,877 + Rru_A3700 0.22 -3.7
4,248,877 + Rru_A3700 0.22 -1.9
4,248,877 + Rru_A3700 0.22 -2.5
4,248,877 + Rru_A3700 0.22 -1.4
4,248,878 - Rru_A3700 0.22 -3.2
4,248,878 - Rru_A3700 0.22 -4.3
4,248,878 - Rru_A3700 0.22 -2.0
4,248,901 + Rru_A3700 0.24 -3.0
4,248,901 + Rru_A3700 0.24 -2.6
4,248,901 + Rru_A3700 0.24 -2.2
4,248,902 - Rru_A3700 0.24 -3.4
4,248,902 - Rru_A3700 0.24 -2.6
4,248,902 - Rru_A3700 0.24 -3.5
4,249,035 - Rru_A3700 0.35 -0.4
4,249,059 - Rru_A3700 0.37 +0.3
4,249,222 + Rru_A3700 0.52 -3.6
4,249,222 + Rru_A3700 0.52 -1.7
4,249,223 - Rru_A3700 0.52 -1.3
4,249,223 - Rru_A3700 0.52 -3.7
4,249,223 - Rru_A3700 0.52 -3.7
4,249,223 - Rru_A3700 0.52 -1.9
4,249,326 - Rru_A3700 0.61 -3.1

Or see this region's nucleotide sequence