Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3698 and Rru_A3699 are separated by 220 nucleotides Rru_A3699 and Rru_A3700 overlap by 4 nucleotides
Rru_A3698: Rru_A3698 - Outer membrane lipoprotein carrier protein LolA (NCBI), at 4,244,658 to 4,245,323
_A3698
Rru_A3699: Rru_A3699 - Acriflavin resistance protein (NCBI), at 4,245,544 to 4,248,633
_A3699
Rru_A3700: Rru_A3700 - Secretion protein HlyD (NCBI), at 4,248,630 to 4,249,775
_A3700
Position (kb)
4245
4246
4247
4248
4249 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 4244.562 kb on + strand at 4244.567 kb on - strand at 4244.567 kb on - strand at 4245.414 kb on - strand at 4245.517 kb on - strand at 4245.545 kb on + strand at 4245.630 kb on + strand at 4245.630 kb on + strand at 4245.630 kb on + strand at 4245.631 kb on - strand at 4245.631 kb on - strand at 4245.631 kb on - strand at 4245.632 kb on + strand at 4245.632 kb on + strand at 4245.632 kb on + strand at 4245.633 kb on - strand at 4245.633 kb on - strand at 4245.633 kb on - strand at 4245.633 kb on - strand at 4245.633 kb on - strand at 4245.633 kb on - strand at 4245.930 kb on + strand, within Rru_A3699 at 4245.931 kb on - strand, within Rru_A3699 at 4245.932 kb on + strand, within Rru_A3699 at 4245.932 kb on + strand, within Rru_A3699 at 4245.932 kb on + strand, within Rru_A3699 at 4245.932 kb on + strand, within Rru_A3699 at 4245.932 kb on + strand, within Rru_A3699 at 4245.932 kb on + strand, within Rru_A3699 at 4245.932 kb on + strand, within Rru_A3699 at 4245.933 kb on - strand, within Rru_A3699 at 4245.933 kb on - strand, within Rru_A3699 at 4245.933 kb on - strand, within Rru_A3699 at 4245.933 kb on - strand, within Rru_A3699 at 4245.933 kb on - strand, within Rru_A3699 at 4245.933 kb on - strand, within Rru_A3699 at 4245.933 kb on - strand, within Rru_A3699 at 4245.933 kb on - strand, within Rru_A3699 at 4246.145 kb on + strand, within Rru_A3699 at 4246.342 kb on - strand, within Rru_A3699 at 4246.343 kb on + strand, within Rru_A3699 at 4246.343 kb on + strand, within Rru_A3699 at 4246.343 kb on + strand, within Rru_A3699 at 4246.344 kb on - strand, within Rru_A3699 at 4246.344 kb on - strand, within Rru_A3699 at 4246.344 kb on - strand, within Rru_A3699 at 4246.344 kb on - strand, within Rru_A3699 at 4246.344 kb on - strand, within Rru_A3699 at 4246.406 kb on + strand, within Rru_A3699 at 4246.406 kb on + strand, within Rru_A3699 at 4246.407 kb on - strand, within Rru_A3699 at 4246.407 kb on - strand, within Rru_A3699 at 4246.422 kb on + strand, within Rru_A3699 at 4246.439 kb on + strand, within Rru_A3699 at 4246.440 kb on - strand, within Rru_A3699 at 4246.440 kb on - strand, within Rru_A3699 at 4246.440 kb on - strand, within Rru_A3699 at 4246.634 kb on + strand, within Rru_A3699 at 4246.635 kb on - strand, within Rru_A3699 at 4246.854 kb on + strand, within Rru_A3699 at 4246.854 kb on + strand, within Rru_A3699 at 4246.854 kb on + strand, within Rru_A3699 at 4246.855 kb on - strand, within Rru_A3699 at 4246.855 kb on - strand, within Rru_A3699 at 4246.914 kb on + strand, within Rru_A3699 at 4246.914 kb on + strand, within Rru_A3699 at 4246.914 kb on + strand, within Rru_A3699 at 4246.914 kb on + strand, within Rru_A3699 at 4246.914 kb on + strand, within Rru_A3699 at 4246.914 kb on + strand, within Rru_A3699 at 4246.915 kb on - strand, within Rru_A3699 at 4246.915 kb on - strand, within Rru_A3699 at 4246.915 kb on - strand, within Rru_A3699 at 4246.915 kb on - strand, within Rru_A3699 at 4246.916 kb on + strand, within Rru_A3699 at 4246.916 kb on + strand, within Rru_A3699 at 4246.917 kb on - strand, within Rru_A3699 at 4246.917 kb on - strand, within Rru_A3699 at 4247.015 kb on + strand, within Rru_A3699 at 4247.016 kb on - strand, within Rru_A3699 at 4247.280 kb on + strand, within Rru_A3699 at 4247.281 kb on - strand, within Rru_A3699 at 4247.298 kb on - strand, within Rru_A3699 at 4247.298 kb on - strand, within Rru_A3699 at 4247.672 kb on + strand, within Rru_A3699 at 4247.961 kb on + strand, within Rru_A3699 at 4247.961 kb on + strand, within Rru_A3699 at 4247.961 kb on + strand, within Rru_A3699 at 4247.961 kb on + strand, within Rru_A3699 at 4248.167 kb on + strand, within Rru_A3699 at 4248.168 kb on - strand, within Rru_A3699 at 4248.168 kb on - strand, within Rru_A3699 at 4248.398 kb on + strand at 4248.398 kb on + strand at 4248.399 kb on - strand at 4248.507 kb on + strand at 4248.877 kb on + strand, within Rru_A3700 at 4248.877 kb on + strand, within Rru_A3700 at 4248.877 kb on + strand, within Rru_A3700 at 4248.877 kb on + strand, within Rru_A3700 at 4248.878 kb on - strand, within Rru_A3700 at 4248.878 kb on - strand, within Rru_A3700 at 4248.878 kb on - strand, within Rru_A3700 at 4248.901 kb on + strand, within Rru_A3700 at 4248.901 kb on + strand, within Rru_A3700 at 4248.901 kb on + strand, within Rru_A3700 at 4248.902 kb on - strand, within Rru_A3700 at 4248.902 kb on - strand, within Rru_A3700 at 4248.902 kb on - strand, within Rru_A3700 at 4249.035 kb on - strand, within Rru_A3700 at 4249.059 kb on - strand, within Rru_A3700 at 4249.222 kb on + strand, within Rru_A3700 at 4249.222 kb on + strand, within Rru_A3700 at 4249.223 kb on - strand, within Rru_A3700 at 4249.223 kb on - strand, within Rru_A3700 at 4249.223 kb on - strand, within Rru_A3700 at 4249.223 kb on - strand, within Rru_A3700 at 4249.326 kb on - strand, within Rru_A3700
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 4,244,562 + +0.3 4,244,567 - -0.1 4,244,567 - +0.1 4,245,414 - +0.1 4,245,517 - +0.4 4,245,545 + +0.1 4,245,630 + -2.8 4,245,630 + -3.1 4,245,630 + -4.4 4,245,631 - -3.9 4,245,631 - -1.4 4,245,631 - -1.8 4,245,632 + -3.4 4,245,632 + -2.8 4,245,632 + -3.9 4,245,633 - +0.0 4,245,633 - -4.0 4,245,633 - -3.4 4,245,633 - -3.0 4,245,633 - -4.5 4,245,633 - -3.2 4,245,930 + Rru_A3699 0.12 -3.6 4,245,931 - Rru_A3699 0.13 -3.6 4,245,932 + Rru_A3699 0.13 +0.6 4,245,932 + Rru_A3699 0.13 -2.6 4,245,932 + Rru_A3699 0.13 +0.6 4,245,932 + Rru_A3699 0.13 -1.4 4,245,932 + Rru_A3699 0.13 +0.6 4,245,932 + Rru_A3699 0.13 -3.2 4,245,932 + Rru_A3699 0.13 -3.0 4,245,933 - Rru_A3699 0.13 -3.3 4,245,933 - Rru_A3699 0.13 -3.1 4,245,933 - Rru_A3699 0.13 +0.6 4,245,933 - Rru_A3699 0.13 -1.1 4,245,933 - Rru_A3699 0.13 -3.7 4,245,933 - Rru_A3699 0.13 -2.9 4,245,933 - Rru_A3699 0.13 -2.3 4,245,933 - Rru_A3699 0.13 -2.9 4,246,145 + Rru_A3699 0.19 -2.8 4,246,342 - Rru_A3699 0.26 -1.1 4,246,343 + Rru_A3699 0.26 -3.2 4,246,343 + Rru_A3699 0.26 -2.2 4,246,343 + Rru_A3699 0.26 -0.0 4,246,344 - Rru_A3699 0.26 -3.1 4,246,344 - Rru_A3699 0.26 -0.4 4,246,344 - Rru_A3699 0.26 -2.8 4,246,344 - Rru_A3699 0.26 -4.5 4,246,344 - Rru_A3699 0.26 +0.6 4,246,406 + Rru_A3699 0.28 -3.6 4,246,406 + Rru_A3699 0.28 -4.1 4,246,407 - Rru_A3699 0.28 -2.7 4,246,407 - Rru_A3699 0.28 -3.2 4,246,422 + Rru_A3699 0.28 -2.5 4,246,439 + Rru_A3699 0.29 -3.0 4,246,440 - Rru_A3699 0.29 +0.6 4,246,440 - Rru_A3699 0.29 -1.6 4,246,440 - Rru_A3699 0.29 -3.2 4,246,634 + Rru_A3699 0.35 -1.4 4,246,635 - Rru_A3699 0.35 -2.9 4,246,854 + Rru_A3699 0.42 -1.8 4,246,854 + Rru_A3699 0.42 -4.0 4,246,854 + Rru_A3699 0.42 -4.1 4,246,855 - Rru_A3699 0.42 -3.8 4,246,855 - Rru_A3699 0.42 -2.2 4,246,914 + Rru_A3699 0.44 -2.0 4,246,914 + Rru_A3699 0.44 -3.6 4,246,914 + Rru_A3699 0.44 -3.2 4,246,914 + Rru_A3699 0.44 -2.3 4,246,914 + Rru_A3699 0.44 -3.1 4,246,914 + Rru_A3699 0.44 -2.7 4,246,915 - Rru_A3699 0.44 -2.6 4,246,915 - Rru_A3699 0.44 -2.4 4,246,915 - Rru_A3699 0.44 +0.6 4,246,915 - Rru_A3699 0.44 -3.9 4,246,916 + Rru_A3699 0.44 -2.8 4,246,916 + Rru_A3699 0.44 -3.5 4,246,917 - Rru_A3699 0.44 -4.5 4,246,917 - Rru_A3699 0.44 -3.7 4,247,015 + Rru_A3699 0.48 -3.1 4,247,016 - Rru_A3699 0.48 -3.1 4,247,280 + Rru_A3699 0.56 +0.0 4,247,281 - Rru_A3699 0.56 -3.9 4,247,298 - Rru_A3699 0.57 -1.8 4,247,298 - Rru_A3699 0.57 -1.5 4,247,672 + Rru_A3699 0.69 +0.6 4,247,961 + Rru_A3699 0.78 +0.6 4,247,961 + Rru_A3699 0.78 -3.1 4,247,961 + Rru_A3699 0.78 -2.9 4,247,961 + Rru_A3699 0.78 -3.7 4,248,167 + Rru_A3699 0.85 -3.1 4,248,168 - Rru_A3699 0.85 -3.0 4,248,168 - Rru_A3699 0.85 -4.0 4,248,398 + -4.1 4,248,398 + +0.2 4,248,399 - -2.8 4,248,507 + -5.0 4,248,877 + Rru_A3700 0.22 -3.7 4,248,877 + Rru_A3700 0.22 -1.9 4,248,877 + Rru_A3700 0.22 -2.5 4,248,877 + Rru_A3700 0.22 -1.4 4,248,878 - Rru_A3700 0.22 -3.2 4,248,878 - Rru_A3700 0.22 -4.3 4,248,878 - Rru_A3700 0.22 -2.0 4,248,901 + Rru_A3700 0.24 -3.0 4,248,901 + Rru_A3700 0.24 -2.6 4,248,901 + Rru_A3700 0.24 -2.2 4,248,902 - Rru_A3700 0.24 -3.4 4,248,902 - Rru_A3700 0.24 -2.6 4,248,902 - Rru_A3700 0.24 -3.5 4,249,035 - Rru_A3700 0.35 -0.4 4,249,059 - Rru_A3700 0.37 +0.3 4,249,222 + Rru_A3700 0.52 -3.6 4,249,222 + Rru_A3700 0.52 -1.7 4,249,223 - Rru_A3700 0.52 -1.3 4,249,223 - Rru_A3700 0.52 -3.7 4,249,223 - Rru_A3700 0.52 -3.7 4,249,223 - Rru_A3700 0.52 -1.9 4,249,326 - Rru_A3700 0.61 -3.1
Or see this region's nucleotide sequence