Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3202

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3201 and Rru_A3202 are separated by 169 nucleotidesRru_A3202 and Rru_A3203 are separated by 28 nucleotides Rru_A3201: Rru_A3201 - ABC transporter component (NCBI), at 3,688,361 to 3,689,440 _A3201 Rru_A3202: Rru_A3202 - DNA topoisomerase (NCBI), at 3,689,610 to 3,692,357 _A3202 Rru_A3203: Rru_A3203 - ribonuclease R (NCBI), at 3,692,386 to 3,694,914 _A3203 Position (kb) 3689 3690 3691 3692 3693Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3688.622 kb on + strand, within Rru_A3201at 3688.623 kb on - strand, within Rru_A3201at 3688.623 kb on - strand, within Rru_A3201at 3688.623 kb on - strand, within Rru_A3201at 3688.640 kb on - strand, within Rru_A3201at 3688.640 kb on - strand, within Rru_A3201at 3688.664 kb on + strand, within Rru_A3201at 3688.664 kb on + strand, within Rru_A3201at 3688.665 kb on - strand, within Rru_A3201at 3688.665 kb on - strand, within Rru_A3201at 3688.937 kb on + strand, within Rru_A3201at 3688.937 kb on + strand, within Rru_A3201at 3688.937 kb on + strand, within Rru_A3201at 3688.937 kb on + strand, within Rru_A3201at 3688.938 kb on - strand, within Rru_A3201at 3688.938 kb on - strand, within Rru_A3201at 3688.938 kb on - strand, within Rru_A3201at 3688.938 kb on - strand, within Rru_A3201at 3689.037 kb on - strand, within Rru_A3201at 3689.057 kb on - strand, within Rru_A3201at 3689.264 kb on - strand, within Rru_A3201at 3689.264 kb on - strand, within Rru_A3201at 3691.860 kb on + strand, within Rru_A3202at 3691.860 kb on + strand, within Rru_A3202at 3691.860 kb on + strand, within Rru_A3202at 3691.860 kb on + strand, within Rru_A3202at 3691.862 kb on + strand, within Rru_A3202at 3691.881 kb on + strand, within Rru_A3202at 3691.881 kb on + strand, within Rru_A3202at 3691.881 kb on + strand, within Rru_A3202at 3691.881 kb on + strand, within Rru_A3202at 3691.882 kb on - strand, within Rru_A3202at 3691.882 kb on - strand, within Rru_A3202at 3691.883 kb on + strand, within Rru_A3202at 3691.883 kb on + strand, within Rru_A3202at 3692.052 kb on + strand, within Rru_A3202at 3692.052 kb on + strand, within Rru_A3202at 3692.052 kb on + strand, within Rru_A3202at 3692.052 kb on + strand, within Rru_A3202at 3692.052 kb on + strand, within Rru_A3202at 3692.109 kb on + strandat 3692.109 kb on + strandat 3692.109 kb on + strandat 3692.109 kb on + strandat 3692.109 kb on + strandat 3692.110 kb on - strandat 3692.110 kb on - strandat 3692.110 kb on - strandat 3692.110 kb on - strandat 3692.110 kb on - strandat 3692.110 kb on - strandat 3692.110 kb on - strandat 3692.508 kb on + strandat 3692.674 kb on - strand, within Rru_A3203at 3693.064 kb on + strand, within Rru_A3203at 3693.065 kb on - strand, within Rru_A3203at 3693.065 kb on - strand, within Rru_A3203at 3693.065 kb on - strand, within Rru_A3203

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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3,688,622 + Rru_A3201 0.24 +0.5
3,688,623 - Rru_A3201 0.24 -0.1
3,688,623 - Rru_A3201 0.24 +0.6
3,688,623 - Rru_A3201 0.24 +0.6
3,688,640 - Rru_A3201 0.26 -0.1
3,688,640 - Rru_A3201 0.26 -0.7
3,688,664 + Rru_A3201 0.28 +0.4
3,688,664 + Rru_A3201 0.28 -0.2
3,688,665 - Rru_A3201 0.28 -0.0
3,688,665 - Rru_A3201 0.28 -0.1
3,688,937 + Rru_A3201 0.53 +0.0
3,688,937 + Rru_A3201 0.53 -0.3
3,688,937 + Rru_A3201 0.53 +0.5
3,688,937 + Rru_A3201 0.53 -0.1
3,688,938 - Rru_A3201 0.53 -0.2
3,688,938 - Rru_A3201 0.53 +0.6
3,688,938 - Rru_A3201 0.53 -0.7
3,688,938 - Rru_A3201 0.53 -0.9
3,689,037 - Rru_A3201 0.63 +0.6
3,689,057 - Rru_A3201 0.64 +1.0
3,689,264 - Rru_A3201 0.84 -0.3
3,689,264 - Rru_A3201 0.84 -1.9
3,691,860 + Rru_A3202 0.82 -5.4
3,691,860 + Rru_A3202 0.82 -4.2
3,691,860 + Rru_A3202 0.82 -3.5
3,691,860 + Rru_A3202 0.82 -5.2
3,691,862 + Rru_A3202 0.82 -3.0
3,691,881 + Rru_A3202 0.83 -3.6
3,691,881 + Rru_A3202 0.83 -4.1
3,691,881 + Rru_A3202 0.83 -3.6
3,691,881 + Rru_A3202 0.83 -4.4
3,691,882 - Rru_A3202 0.83 -3.6
3,691,882 - Rru_A3202 0.83 -6.0
3,691,883 + Rru_A3202 0.83 -4.5
3,691,883 + Rru_A3202 0.83 -5.9
3,692,052 + Rru_A3202 0.89 -3.6
3,692,052 + Rru_A3202 0.89 -3.2
3,692,052 + Rru_A3202 0.89 -3.4
3,692,052 + Rru_A3202 0.89 -3.7
3,692,052 + Rru_A3202 0.89 -2.7
3,692,109 + -4.2
3,692,109 + -4.1
3,692,109 + -3.1
3,692,109 + -4.9
3,692,109 + -4.4
3,692,110 - -5.1
3,692,110 - -4.5
3,692,110 - -4.4
3,692,110 - -5.4
3,692,110 - -6.2
3,692,110 - -4.9
3,692,110 - -5.1
3,692,508 + -0.1
3,692,674 - Rru_A3203 0.11 -3.0
3,693,064 + Rru_A3203 0.27 +0.4
3,693,065 - Rru_A3203 0.27 -1.3
3,693,065 - Rru_A3203 0.27 -2.3
3,693,065 - Rru_A3203 0.27 -1.0

Or see this region's nucleotide sequence