Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3168

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3167 and Rru_A3168 are separated by 6 nucleotidesRru_A3168 and Rru_A3169 overlap by 4 nucleotides Rru_A3167: Rru_A3167 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 3,659,493 to 3,660,596 _A3167 Rru_A3168: Rru_A3168 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 3,660,603 to 3,661,643 _A3168 Rru_A3169: Rru_A3169 - ABC transporter component (NCBI), at 3,661,640 to 3,663,301 _A3169 Position (kb) 3660 3661 3662Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3659.749 kb on - strand, within Rru_A3167at 3659.824 kb on - strand, within Rru_A3167at 3659.850 kb on + strand, within Rru_A3167at 3659.851 kb on - strand, within Rru_A3167at 3659.853 kb on + strand, within Rru_A3167at 3659.937 kb on + strand, within Rru_A3167at 3659.937 kb on + strand, within Rru_A3167at 3659.937 kb on + strand, within Rru_A3167at 3659.938 kb on - strand, within Rru_A3167at 3660.058 kb on + strand, within Rru_A3167at 3660.059 kb on - strand, within Rru_A3167at 3660.059 kb on - strand, within Rru_A3167at 3660.059 kb on - strand, within Rru_A3167at 3660.165 kb on + strand, within Rru_A3167at 3660.176 kb on + strand, within Rru_A3167at 3660.176 kb on + strand, within Rru_A3167at 3660.270 kb on + strand, within Rru_A3167at 3660.270 kb on + strand, within Rru_A3167at 3660.442 kb on + strand, within Rru_A3167at 3660.474 kb on + strand, within Rru_A3167at 3660.498 kb on + strandat 3660.499 kb on - strandat 3660.499 kb on - strandat 3660.499 kb on - strandat 3660.499 kb on - strandat 3660.499 kb on - strandat 3660.500 kb on + strandat 3660.500 kb on + strandat 3660.501 kb on - strandat 3660.501 kb on - strandat 3660.501 kb on - strandat 3660.549 kb on + strandat 3660.549 kb on + strandat 3660.550 kb on - strandat 3660.594 kb on + strandat 3660.762 kb on + strand, within Rru_A3168at 3660.762 kb on + strand, within Rru_A3168at 3660.762 kb on + strand, within Rru_A3168at 3660.763 kb on - strand, within Rru_A3168at 3660.763 kb on - strand, within Rru_A3168at 3660.763 kb on - strand, within Rru_A3168at 3660.798 kb on + strand, within Rru_A3168at 3660.856 kb on - strand, within Rru_A3168at 3660.856 kb on - strand, within Rru_A3168at 3660.915 kb on + strand, within Rru_A3168at 3660.916 kb on - strand, within Rru_A3168at 3661.023 kb on + strand, within Rru_A3168at 3661.024 kb on - strand, within Rru_A3168at 3661.024 kb on - strand, within Rru_A3168at 3661.110 kb on + strand, within Rru_A3168at 3661.312 kb on - strand, within Rru_A3168at 3662.429 kb on + strand, within Rru_A3169

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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3,659,749 - Rru_A3167 0.23 -1.6
3,659,824 - Rru_A3167 0.30 -2.0
3,659,850 + Rru_A3167 0.32 -2.0
3,659,851 - Rru_A3167 0.32 -1.6
3,659,853 + Rru_A3167 0.33 -1.8
3,659,937 + Rru_A3167 0.40 +0.6
3,659,937 + Rru_A3167 0.40 -2.3
3,659,937 + Rru_A3167 0.40 -2.5
3,659,938 - Rru_A3167 0.40 -1.9
3,660,058 + Rru_A3167 0.51 -3.2
3,660,059 - Rru_A3167 0.51 -1.4
3,660,059 - Rru_A3167 0.51 -1.4
3,660,059 - Rru_A3167 0.51 -0.8
3,660,165 + Rru_A3167 0.61 -1.6
3,660,176 + Rru_A3167 0.62 -1.9
3,660,176 + Rru_A3167 0.62 -3.3
3,660,270 + Rru_A3167 0.70 -1.8
3,660,270 + Rru_A3167 0.70 -3.7
3,660,442 + Rru_A3167 0.86 +0.6
3,660,474 + Rru_A3167 0.89 -2.1
3,660,498 + -1.7
3,660,499 - -2.0
3,660,499 - -2.7
3,660,499 - -3.1
3,660,499 - -1.9
3,660,499 - -1.1
3,660,500 + -3.1
3,660,500 + -0.9
3,660,501 - -2.6
3,660,501 - -3.5
3,660,501 - -1.1
3,660,549 + -2.0
3,660,549 + -3.9
3,660,550 - -2.9
3,660,594 + +0.1
3,660,762 + Rru_A3168 0.15 -2.7
3,660,762 + Rru_A3168 0.15 -2.6
3,660,762 + Rru_A3168 0.15 -2.5
3,660,763 - Rru_A3168 0.15 -1.1
3,660,763 - Rru_A3168 0.15 +0.6
3,660,763 - Rru_A3168 0.15 -2.5
3,660,798 + Rru_A3168 0.19 -2.2
3,660,856 - Rru_A3168 0.24 -1.8
3,660,856 - Rru_A3168 0.24 -2.3
3,660,915 + Rru_A3168 0.30 -1.6
3,660,916 - Rru_A3168 0.30 -3.1
3,661,023 + Rru_A3168 0.40 -2.0
3,661,024 - Rru_A3168 0.40 -3.4
3,661,024 - Rru_A3168 0.40 -1.9
3,661,110 + Rru_A3168 0.49 -3.0
3,661,312 - Rru_A3168 0.68 -1.8
3,662,429 + Rru_A3169 0.47 -1.9

Or see this region's nucleotide sequence